diff --git a/rpcs3/Emu/IdManager.h b/rpcs3/Emu/IdManager.h
index 7e536b9265..94d2d3ffd5 100644
--- a/rpcs3/Emu/IdManager.h
+++ b/rpcs3/Emu/IdManager.h
@@ -1,4 +1,4 @@
-#pragma once
+#pragma once
 
 #include "Utilities/types.h"
 #include "Utilities/mutex.h"
@@ -633,8 +633,8 @@ public:
 	}
 
 	// Emplace the object returned by provider() and return it if no object exists
-	template <typename T, typename F>
-	static auto import(F&& provider) -> decltype(static_cast<std::shared_ptr<T>>(provider()))
+	template <typename T, typename F, typename... Args>
+	static auto import(F&& provider, Args&&... args) -> decltype(static_cast<std::shared_ptr<T>>(provider(std::forward<Args>(args)...)))
 	{
 		std::shared_ptr<T> ptr;
 		{
@@ -644,7 +644,7 @@ public:
 
 			if (!cur)
 			{
-				ptr = provider();
+				ptr = provider(std::forward<Args>(args)...);
 
 				if (ptr)
 				{
@@ -662,8 +662,8 @@ public:
 	}
 
 	// Emplace the object return by provider() (old object will be removed if it exists)
-	template <typename T, typename F>
-	static auto import_always(F&& provider) -> decltype(static_cast<std::shared_ptr<T>>(provider()))
+	template <typename T, typename F, typename... Args>
+	static auto import_always(F&& provider, Args&&... args) -> decltype(static_cast<std::shared_ptr<T>>(provider(std::forward<Args>(args)...)))
 	{
 		std::shared_ptr<T> ptr;
 		std::shared_ptr<void> old;
@@ -672,7 +672,7 @@ public:
 
 			auto& cur = g_vec[get_type<T>()];
 
-			ptr = provider();
+			ptr = provider(std::forward<Args>(args)...);
 
 			if (ptr)
 			{
diff --git a/rpcs3/Emu/Io/PadHandler.cpp b/rpcs3/Emu/Io/PadHandler.cpp
index 151aa54884..b29d1195e5 100644
--- a/rpcs3/Emu/Io/PadHandler.cpp
+++ b/rpcs3/Emu/Io/PadHandler.cpp
@@ -1,5 +1,6 @@
 #include "stdafx.h"
 #include "PadHandler.h"
+#include "pad_thread.h"
 
 cfg_input g_cfg_input;
 
@@ -268,13 +269,25 @@ bool PadHandlerBase::has_led()
 	return b_has_led;
 }
 
-std::string PadHandlerBase::get_config_dir(pad_handler type)
+std::string PadHandlerBase::get_config_dir(pad_handler type, const std::string& title_id)
 {
+	if (!title_id.empty())
+	{
+		return Emu.GetCustomInputConfigDir(title_id) + fmt::format("%s", type) + "/";
+	}
 	return fs::get_config_dir() + "/InputConfigs/" + fmt::format("%s", type) + "/";
 }
 
-std::string PadHandlerBase::get_config_filename(int i)
+std::string PadHandlerBase::get_config_filename(int i, const std::string& title_id)
 {
+	if (!title_id.empty() && fs::is_file(Emu.GetCustomInputConfigPath(title_id)))
+	{
+		const std::string path = Emu.GetCustomInputConfigDir(title_id) + g_cfg_input.player[i]->handler.to_string() + "/" + g_cfg_input.player[i]->profile.to_string() + ".yml";
+		if (fs::is_file(path))
+		{
+			return path;
+		}
+	}
 	return fs::get_config_dir() + "/InputConfigs/" + g_cfg_input.player[i]->handler.to_string() + "/" + g_cfg_input.player[i]->profile.to_string() + ".yml";
 }
 
@@ -286,7 +299,7 @@ void PadHandlerBase::init_configs()
 	{
 		if (g_cfg_input.player[i]->handler == m_type)
 		{
-			init_config(&m_pad_configs[index], get_config_filename(i));
+			init_config(&m_pad_configs[index], get_config_filename(i, pad::g_title_id));
 			index++;
 		}
 	}
diff --git a/rpcs3/Emu/Io/PadHandler.h b/rpcs3/Emu/Io/PadHandler.h
index 414f2b142f..a1d57aa8ca 100644
--- a/rpcs3/Emu/Io/PadHandler.h
+++ b/rpcs3/Emu/Io/PadHandler.h
@@ -7,6 +7,7 @@
 #include "Utilities/Config.h"
 #include "Utilities/types.h"
 #include "Emu/System.h"
+#include "Emu/GameInfo.h"
 
 // TODO: HLE info (constants, structs, etc.) should not be available here
 
@@ -268,7 +269,7 @@ struct cfg_player final : cfg::node
 
 struct cfg_input final : cfg::node
 {
-	const std::string cfg_name = fs::get_config_dir() + "/config_input.yml";
+	std::string cfg_name = fs::get_config_dir() + "/config_input.yml";
 
 	cfg_player player1{ this, "Player 1 Input", pad_handler::keyboard };
 	cfg_player player2{ this, "Player 2 Input", pad_handler::null };
@@ -280,18 +281,32 @@ struct cfg_input final : cfg::node
 
 	cfg_player *player[7]{ &player1, &player2, &player3, &player4, &player5, &player6, &player7 }; // Thanks gcc! 
 
-	bool load()
+	bool load(const std::string& title_id = "")
 	{
-		if (fs::file cfg_file{ cfg_name, fs::read })
+		cfg_name = Emu.GetCustomInputConfigPath(title_id);
+
+		if (!fs::is_file(cfg_name))
+		{
+			cfg_name = fs::get_config_dir() + "/config_input.yml";
+		}
+
+		if (fs::file cfg_file{cfg_name, fs::read})
 		{
 			return from_string(cfg_file.to_string());
 		}
-
 		return false;
 	}
 
-	void save()
+	void save(const std::string& title_id = "")
 	{
+		if (title_id.empty())
+		{
+			cfg_name = fs::get_config_dir() + "/config_input.yml";
+		}
+		else
+		{
+			cfg_name = Emu.GetCustomInputConfigPath(title_id);
+		}
 		fs::file(cfg_name, fs::rewrite).write(to_string());
 	}
 };
@@ -460,8 +475,8 @@ public:
 	bool has_deadzones();
 	bool has_led();
 
-	static std::string get_config_dir(pad_handler type);
-	static std::string get_config_filename(int i);
+	static std::string get_config_dir(pad_handler type, const std::string& title_id = "");
+	static std::string get_config_filename(int i, const std::string& title_id = "");
 
 	virtual bool Init() { return true; }
 	PadHandlerBase(pad_handler type = pad_handler::null);
diff --git a/rpcs3/Emu/System.cpp b/rpcs3/Emu/System.cpp
index c09e35f49b..638e243540 100644
--- a/rpcs3/Emu/System.cpp
+++ b/rpcs3/Emu/System.cpp
@@ -39,7 +39,6 @@
 
 #include "Utilities/GDBDebugServer.h"
 
-#include "Utilities/sysinfo.h"
 #include "Utilities/JIT.h"
 
 #if defined(_WIN32) || defined(HAVE_VULKAN)
@@ -303,31 +302,31 @@ void Emulator::Init()
 
 	if (g_cfg.vfs.init_dirs)
 	{
-	fs::create_path(dev_hdd0);
-	fs::create_path(dev_hdd1);
-	fs::create_path(dev_usb);
-	fs::create_dir(dev_hdd0 + "game/");
-	fs::create_dir(dev_hdd0 + "game/TEST12345/");
-	fs::create_dir(dev_hdd0 + "game/TEST12345/USRDIR/");
-	fs::create_dir(dev_hdd0 + "game/.locks/");
-	fs::create_dir(dev_hdd0 + "home/");
-	fs::create_dir(dev_hdd0 + "home/" + m_usr + "/");
-	fs::create_dir(dev_hdd0 + "home/" + m_usr + "/exdata/");
-	fs::create_dir(dev_hdd0 + "home/" + m_usr + "/savedata/");
-	fs::create_dir(dev_hdd0 + "home/" + m_usr + "/trophy/");
-	fs::write_file(dev_hdd0 + "home/" + m_usr + "/localusername", fs::create + fs::excl + fs::write, "User"s);
-	fs::create_dir(dev_hdd0 + "disc/");
-	fs::create_dir(dev_hdd0 + "savedata/");
-	fs::create_dir(dev_hdd0 + "savedata/vmc/");
-	fs::create_dir(dev_hdd1 + "cache/");
-	fs::create_dir(dev_hdd1 + "game/");
+		fs::create_path(dev_hdd0);
+		fs::create_path(dev_hdd1);
+		fs::create_path(dev_usb);
+		fs::create_dir(dev_hdd0 + "game/");
+		fs::create_dir(dev_hdd0 + "game/TEST12345/");
+		fs::create_dir(dev_hdd0 + "game/TEST12345/USRDIR/");
+		fs::create_dir(dev_hdd0 + "game/.locks/");
+		fs::create_dir(dev_hdd0 + "home/");
+		fs::create_dir(dev_hdd0 + "home/" + m_usr + "/");
+		fs::create_dir(dev_hdd0 + "home/" + m_usr + "/exdata/");
+		fs::create_dir(dev_hdd0 + "home/" + m_usr + "/savedata/");
+		fs::create_dir(dev_hdd0 + "home/" + m_usr + "/trophy/");
+		fs::write_file(dev_hdd0 + "home/" + m_usr + "/localusername", fs::create + fs::excl + fs::write, "User"s);
+		fs::create_dir(dev_hdd0 + "disc/");
+		fs::create_dir(dev_hdd0 + "savedata/");
+		fs::create_dir(dev_hdd0 + "savedata/vmc/");
+		fs::create_dir(dev_hdd1 + "cache/");
+		fs::create_dir(dev_hdd1 + "game/");
 	}
 
 	fs::create_path(fs::get_cache_dir() + "shaderlog/");
 	fs::create_path(fs::get_config_dir() + "captures/");
 
 #ifdef WITH_GDB_DEBUGGER
-	LOG_SUCCESS(GENERAL, "GDB debug server will be started and listening on %d upon emulator boot", (int) g_cfg.misc.gdb_server_port);
+	LOG_SUCCESS(GENERAL, "GDB debug server will be started and listening on %d upon emulator boot", (int)g_cfg.misc.gdb_server_port);
 #endif
 
 	// Initialize patch engine
@@ -506,7 +505,7 @@ bool Emulator::BootRsxCapture(const std::string& path)
 	GetCallbacks().on_ready();
 
 	auto gsrender = fxm::import<GSRender>(Emu.GetCallbacks().get_gs_render);
-	auto padhandler = fxm::import<pad_thread>(Emu.GetCallbacks().get_pad_handler);
+	auto padhandler = fxm::import<pad_thread>(Emu.GetCallbacks().get_pad_handler, "");
 
 	if (gsrender.get() == nullptr || padhandler.get() == nullptr)
 		return false;
@@ -727,6 +726,22 @@ std::string Emulator::GetCustomConfigPath(const std::string& title_id, bool get_
 	return path;
 }
 
+std::string Emulator::GetCustomInputConfigDir(const std::string& title_id)
+{
+	// Notice: the extra folder for each title id may be removed at a later stage
+	// Warning: make sure to change any function that removes this directory as well
+#ifdef _WIN32
+	return fs::get_config_dir() + "config/custom_input_configs/" + title_id + "/";
+#else
+	return fs::get_config_dir() + "custom_input_configs/" + title_id + "/";
+#endif
+}
+
+std::string Emulator::GetCustomInputConfigPath(const std::string& title_id)
+{
+	return GetCustomInputConfigDir(title_id) + "/config_input_" + title_id + ".yml";
+}
+
 void Emulator::SetForceBoot(bool force_boot)
 {
 	m_force_boot = force_boot;
@@ -1343,7 +1358,7 @@ void Emulator::Load(bool add_only, bool force_global_config)
 			}
 
 			fxm::import<GSRender>(Emu.GetCallbacks().get_gs_render); // TODO: must be created in appropriate sys_rsx syscall
-			fxm::import<pad_thread>(Emu.GetCallbacks().get_pad_handler);
+			fxm::import<pad_thread>(Emu.GetCallbacks().get_pad_handler, m_title_id);
 			network_thread_init();
 		}
 		else if (ppu_prx.open(elf_file) == elf_error::ok)
diff --git a/rpcs3/Emu/System.h b/rpcs3/Emu/System.h
index 99d1916014..40a5d2236d 100644
--- a/rpcs3/Emu/System.h
+++ b/rpcs3/Emu/System.h
@@ -189,12 +189,12 @@ struct EmuCallbacks
 	std::function<void()> on_stop;
 	std::function<void()> on_ready;
 	std::function<void()> exit;
-	std::function<void()> reset_pads;
+	std::function<void(const std::string&)> reset_pads;
 	std::function<void(bool)> enable_pads;
 	std::function<void(s32, s32)> handle_taskbar_progress; // (type, value) type: 0 for reset, 1 for increment, 2 for set_limit
 	std::function<std::shared_ptr<class KeyboardHandlerBase>()> get_kb_handler;
 	std::function<std::shared_ptr<class MouseHandlerBase>()> get_mouse_handler;
-	std::function<std::shared_ptr<class pad_thread>()> get_pad_handler;
+	std::function<std::shared_ptr<class pad_thread>(const std::string&)> get_pad_handler;
 	std::function<std::unique_ptr<class GSFrameBase>()> get_gs_frame;
 	std::function<std::shared_ptr<class GSRender>()> get_gs_render;
 	std::function<std::shared_ptr<class AudioBackend>()> get_audio;
@@ -326,6 +326,8 @@ public:
 
 	static std::string GetCustomConfigDir();
 	static std::string GetCustomConfigPath(const std::string& title_id, bool get_deprecated_path = false);
+	static std::string GetCustomInputConfigDir(const std::string& title_id);
+	static std::string GetCustomInputConfigPath(const std::string& title_id);
 
 	void SetForceBoot(bool force_boot);
 
diff --git a/rpcs3/Icons/combo_config_bordered.png b/rpcs3/Icons/combo_config_bordered.png
new file mode 100644
index 0000000000..16a5e106cc
Binary files /dev/null and b/rpcs3/Icons/combo_config_bordered.png differ
diff --git a/rpcs3/Icons/controllers_2.png b/rpcs3/Icons/controllers_2.png
new file mode 100644
index 0000000000..b26813ca35
Binary files /dev/null and b/rpcs3/Icons/controllers_2.png differ
diff --git a/rpcs3/pad_thread.cpp b/rpcs3/pad_thread.cpp
index cb4f81aab6..d3c22bc7a9 100644
--- a/rpcs3/pad_thread.cpp
+++ b/rpcs3/pad_thread.cpp
@@ -14,6 +14,7 @@ namespace pad
 {
 	atomic_t<pad_thread*> g_current = nullptr;
 	std::recursive_mutex g_pad_mutex;
+	std::string g_title_id;
 }
 
 struct pad_setting
@@ -23,8 +24,9 @@ struct pad_setting
 	u32 device_type;
 };
 
-pad_thread::pad_thread(void *_curthread, void *_curwindow) : curthread(_curthread), curwindow(_curwindow)
+pad_thread::pad_thread(void *_curthread, void *_curwindow, const std::string& title_id) : curthread(_curthread), curwindow(_curwindow)
 {
+	pad::g_title_id = title_id;
 	Init();
 
 	thread = std::make_shared<std::thread>(&pad_thread::ThreadFunc, this);
@@ -65,7 +67,7 @@ void pad_thread::Init()
 
 	handlers.clear();
 
-	g_cfg_input.load();
+	g_cfg_input.load(pad::g_title_id);
 
 	std::shared_ptr<keyboard_pad_handler> keyptr;
 
@@ -142,8 +144,9 @@ void pad_thread::SetRumble(const u32 pad, u8 largeMotor, bool smallMotor)
 	}
 }
 
-void pad_thread::Reset()
+void pad_thread::Reset(const std::string& title_id)
 {
+	pad::g_title_id = title_id;
 	reset = active.load();
 }
 
diff --git a/rpcs3/pad_thread.h b/rpcs3/pad_thread.h
index e918366bd4..499555eaa0 100644
--- a/rpcs3/pad_thread.h
+++ b/rpcs3/pad_thread.h
@@ -1,4 +1,4 @@
-#pragma once
+#pragma once
 
 #include <map>
 #include <thread>
@@ -16,14 +16,14 @@ struct PadInfo
 class pad_thread
 {
 public:
-	pad_thread(void *_curthread, void *_curwindow); // void * instead of QThread * and QWindow * because of include in emucore
+	pad_thread(void* _curthread, void* _curwindow, const std::string& title_id = ""); // void * instead of QThread * and QWindow * because of include in emucore
 	~pad_thread();
 
 	PadInfo& GetInfo() { return m_info; }
 	auto& GetPads() { return m_pads; }
 	void SetRumble(const u32 pad, u8 largeMotor, bool smallMotor);
 	void Init();
-	void Reset();
+	void Reset(const std::string& title_id = "");
 	void SetEnabled(bool enabled);
 	void SetIntercepted(bool intercepted);
 
@@ -50,6 +50,7 @@ namespace pad
 {
 	extern atomic_t<pad_thread*> g_current;
 	extern std::recursive_mutex g_pad_mutex;
+	extern std::string g_title_id;
 
 	static inline class pad_thread* get_current_handler()
 	{
diff --git a/rpcs3/resources.qrc b/rpcs3/resources.qrc
index 3574e9ded1..14a3a0d619 100644
--- a/rpcs3/resources.qrc
+++ b/rpcs3/resources.qrc
@@ -18,5 +18,7 @@
         <file>Icons/open.png</file>
         <file>Icons/custom_config.png</file>
         <file>Icons/custom_config_2.png</file>
+        <file>Icons/controllers_2.png</file>
+        <file>Icons/combo_config_bordered.png</file>
     </qresource>
 </RCC>
diff --git a/rpcs3/rpcs3_app.cpp b/rpcs3/rpcs3_app.cpp
index 2a7abe4e5e..1c3445a07b 100644
--- a/rpcs3/rpcs3_app.cpp
+++ b/rpcs3/rpcs3_app.cpp
@@ -142,9 +142,9 @@ void rpcs3_app::InitializeCallbacks()
 		RequestCallAfter(std::move(func));
 	};
 
-	callbacks.reset_pads = [this]()
+	callbacks.reset_pads = [this](const std::string& title_id = "")
 	{
-		pad::get_current_handler()->Reset();
+		pad::get_current_handler()->Reset(title_id);
 	};
 	callbacks.enable_pads = [this](bool enable)
 	{
@@ -183,9 +183,9 @@ void rpcs3_app::InitializeCallbacks()
 		}
 	};
 
-	callbacks.get_pad_handler = [this]() -> std::shared_ptr<pad_thread>
+	callbacks.get_pad_handler = [this](const std::string& title_id) -> std::shared_ptr<pad_thread>
 	{
-		return std::make_shared<pad_thread>(thread(), gameWindow);
+		return std::make_shared<pad_thread>(thread(), gameWindow, title_id);
 	};
 
 	callbacks.get_gs_frame = [this]() -> std::unique_ptr<GSFrameBase>
diff --git a/rpcs3/rpcs3qt/game_list_frame.cpp b/rpcs3/rpcs3qt/game_list_frame.cpp
index 13aaa8a056..0fe493c2ac 100644
--- a/rpcs3/rpcs3qt/game_list_frame.cpp
+++ b/rpcs3/rpcs3qt/game_list_frame.cpp
@@ -1,6 +1,7 @@
 #include "game_list_frame.h"
 #include "qt_utils.h"
 #include "settings_dialog.h"
+#include "pad_settings_dialog.h"
 #include "table_item_delegate.h"
 #include "custom_table_widget_item.h"
 #include "input_dialog.h"
@@ -114,6 +115,10 @@ game_list_frame::game_list_frame(std::shared_ptr<gui_settings> guiSettings, std:
 		QMenu* configure = new QMenu(this);
 		configure->addActions(m_columnActs);
 		configure->exec(mapToGlobal(pos));
+
+		QMenu* pad_configure = new QMenu(this);
+		pad_configure->addActions(m_columnActs);
+		pad_configure->exec(mapToGlobal(pos));
 	});
 
 	connect(m_xgrid, &QTableWidget::itemDoubleClicked, this, &game_list_frame::doubleClickedSlot);
@@ -471,12 +476,14 @@ void game_list_frame::Refresh(const bool fromDrive, const bool scrollAfter)
 			}
 
 			const auto compat = m_game_compat->GetCompatibility(game.serial);
+
 			const bool hasCustomConfig = fs::is_file(Emu.GetCustomConfigPath(game.serial)) || fs::is_file(Emu.GetCustomConfigPath(game.serial, true));
+			const bool hasCustomPadConfig = fs::is_file(Emu.GetCustomInputConfigPath(game.serial));
 
 			const QColor color = getGridCompatibilityColor(compat.color);
-			const QPixmap pxmap = PaintedPixmap(img, hasCustomConfig, color);
+			const QPixmap pxmap = PaintedPixmap(img, hasCustomConfig, hasCustomPadConfig, color);
 
-			m_game_data.push_back(game_info(new gui_game_info{ game, compat, img, pxmap, hasCustomConfig }));
+			m_game_data.push_back(game_info(new gui_game_info{game, compat, img, pxmap, hasCustomConfig, hasCustomPadConfig}));
 		}
 		catch (const std::exception& e)
 		{
@@ -695,6 +702,7 @@ void game_list_frame::ShowContextMenu(const QPoint &pos)
 	}
 	myMenu.addAction(boot);
 	QAction* configure = myMenu.addAction(tr("&Configure"));
+	QAction* pad_configure = myMenu.addAction(tr("&Configure pads"));
 	QAction* createPPUCache = myMenu.addAction(tr("&Create PPU Cache"));
 	myMenu.addSeparator();
 	QAction* renameTitle = myMenu.addAction(tr("&Rename In Game List"));
@@ -709,9 +717,20 @@ void game_list_frame::ShowContextMenu(const QPoint &pos)
 		QAction* remove_custom_config = remove_menu->addAction(tr("&Remove Custom Configuration"));
 		connect(remove_custom_config, &QAction::triggered, [=]()
 		{
-			if (RemoveCustomConfiguration(currGame.serial, true))
+			if (RemoveCustomConfiguration(currGame.serial, gameinfo, true))
 			{
-				ShowCustomConfigIcon(item, false);
+				ShowCustomConfigIcon(item, config::type::emu);
+			}
+		});
+	}
+	if (gameinfo->hasCustomPadConfig)
+	{
+		QAction* remove_custom_pad_config = remove_menu->addAction(tr("&Remove Custom Pad Configuration"));
+		connect(remove_custom_pad_config, &QAction::triggered, [=]()
+		{
+			if (RemoveCustomPadConfiguration(currGame.serial, gameinfo, true))
+			{
+				ShowCustomConfigIcon(item, config::type::pad);
 			}
 		});
 	}
@@ -775,7 +794,33 @@ void game_list_frame::ShowContextMenu(const QPoint &pos)
 		settings_dialog dlg(m_gui_settings, m_emu_settings, 0, this, &currGame);
 		if (dlg.exec() == QDialog::Accepted && !gameinfo->hasCustomConfig)
 		{
-			ShowCustomConfigIcon(item, true);
+			gameinfo->hasCustomConfig = true;
+			ShowCustomConfigIcon(item, config::type::emu);
+		}
+	});
+	connect(pad_configure, &QAction::triggered, [=]
+	{
+		if (!Emu.IsStopped())
+		{
+			Emu.GetCallbacks().enable_pads(false);
+		}
+		pad_settings_dialog dlg(this, &currGame);
+		connect(&dlg, &QDialog::finished, [this](int/* result*/)
+		{
+			if (Emu.IsStopped())
+			{
+				return;
+			}
+			Emu.GetCallbacks().reset_pads(Emu.GetTitleID());
+		});
+		if (dlg.exec() == QDialog::Accepted && !gameinfo->hasCustomPadConfig)
+		{
+			gameinfo->hasCustomPadConfig = true;
+			ShowCustomConfigIcon(item, config::type::pad);
+		}
+		if (!Emu.IsStopped())
+		{
+			Emu.GetCallbacks().enable_pads(true);
 		}
 	});
 	connect(hide_serial, &QAction::triggered, [=](bool checked)
@@ -801,7 +846,7 @@ void game_list_frame::ShowContextMenu(const QPoint &pos)
 		}
 
 		QMessageBox* mb = new QMessageBox(QMessageBox::Question, tr("Confirm %1 Removal").arg(qstr(currGame.category)), tr("Permanently remove %0 from drive?\nPath: %1").arg(name).arg(qstr(currGame.path)), QMessageBox::Yes | QMessageBox::No, this);
-		mb->setCheckBox(new QCheckBox(tr("Remove caches and custom config")));
+		mb->setCheckBox(new QCheckBox(tr("Remove caches and custom configs")));
 		mb->deleteLater();
 		if (mb->exec() == QMessageBox::Yes)
 		{
@@ -811,6 +856,7 @@ void game_list_frame::ShowContextMenu(const QPoint &pos)
 				RemovePPUCache(cache_base_dir);
 				RemoveSPUCache(cache_base_dir);
 				RemoveCustomConfiguration(currGame.serial);
+				RemoveCustomPadConfiguration(currGame.serial);
 			}
 			fs::remove_all(currGame.path);
 			m_game_data.erase(std::remove(m_game_data.begin(), m_game_data.end(), gameinfo), m_game_data.end());
@@ -933,7 +979,7 @@ bool game_list_frame::CreatePPUCache(const std::string& path)
 	return success;
 }
 
-bool game_list_frame::RemoveCustomConfiguration(const std::string& title_id, bool is_interactive)
+bool game_list_frame::RemoveCustomConfiguration(const std::string& title_id, game_info game, bool is_interactive)
 {
 	const std::string config_path_new = Emu.GetCustomConfigPath(title_id);
 	const std::string config_path_old = Emu.GetCustomConfigPath(title_id, true);
@@ -954,6 +1000,10 @@ bool game_list_frame::RemoveCustomConfiguration(const std::string& title_id, boo
 		}
 		if (fs::remove_file(path))
 		{
+			if (game)
+			{
+				game->hasCustomConfig = false;
+			}
 			LOG_SUCCESS(GENERAL, "Removed configuration file: %s", path);
 		}
 		else
@@ -971,6 +1021,41 @@ bool game_list_frame::RemoveCustomConfiguration(const std::string& title_id, boo
 	return result;
 }
 
+bool game_list_frame::RemoveCustomPadConfiguration(const std::string& title_id, game_info game, bool is_interactive)
+{
+	const std::string config_dir = Emu.GetCustomInputConfigDir(title_id);
+
+	if (!fs::is_dir(config_dir))
+		return true;
+
+	if (is_interactive && QMessageBox::question(this, tr("Confirm Removal"), (!Emu.IsStopped() && Emu.GetTitleID() == title_id)
+		? tr("Remove custom pad configuration?\nYour configuration will revert to the global pad settings.")
+		: tr("Remove custom pad configuration?")) != QMessageBox::Yes)
+		return true;
+
+	if (QDir(qstr(config_dir)).removeRecursively())
+	{
+		if (game)
+		{
+			game->hasCustomPadConfig = false;
+		}
+		if (!Emu.IsStopped() && Emu.GetTitleID() == title_id)
+		{
+			Emu.GetCallbacks().enable_pads(false);
+			Emu.GetCallbacks().reset_pads(title_id);
+			Emu.GetCallbacks().enable_pads(true);
+		}
+		LOG_NOTICE(GENERAL, "Removed pad configuration directory: %s", config_dir);
+		return true;
+	}
+	else if (is_interactive)
+	{
+		QMessageBox::warning(this, tr("Warning!"), tr("Failed to completely remove pad configuration directory!"));
+		LOG_FATAL(GENERAL, "Failed to completely remove pad configuration directory: %s\nError: %s", config_dir, fs::g_tls_error);
+	}
+	return false;
+}
+
 bool game_list_frame::RemoveShadersCache(const std::string& base_dir, bool is_interactive)
 {
 	if (!fs::is_dir(base_dir))
@@ -1260,6 +1345,52 @@ void game_list_frame::BatchRemoveCustomConfigurations()
 	Refresh(true);
 }
 
+void game_list_frame::BatchRemoveCustomPadConfigurations()
+{
+	std::set<std::string> serials;
+	for (const auto& game : m_game_data)
+	{
+		if (game->hasCustomPadConfig && !serials.count(game->info.serial))
+		{
+			serials.emplace(game->info.serial);
+		}
+	}
+	const u32 total = serials.size();
+
+	if (total == 0)
+	{
+		QMessageBox::information(this, tr("Custom Pad Configuration Batch Removal"), tr("No files found"), QMessageBox::Ok);
+		return;
+	}
+
+	progress_dialog* pdlg = new progress_dialog(tr("Removing all custom pad configurations"), tr("Cancel"), 0, total, this);
+	pdlg->setWindowTitle(tr("Custom Pad Configuration Batch Removal"));
+	pdlg->setAutoClose(false);
+	pdlg->setAutoReset(false);
+	pdlg->show();
+
+	u32 removed = 0;
+	for (const auto& serial : serials)
+	{
+		if (pdlg->wasCanceled())
+		{
+			LOG_NOTICE(GENERAL, "Custom Pad Configuration Batch Removal was canceled. %d/%d custom pad configurations cleared", removed, total);
+			break;
+		}
+		QApplication::processEvents();
+
+		if (RemoveCustomPadConfiguration(serial))
+		{
+			pdlg->SetValue(++removed);
+		}
+	}
+
+	pdlg->setLabelText(tr("%0/%1 custom pad configurations cleared").arg(removed).arg(total));
+	pdlg->setCancelButtonText(tr("OK"));
+	QApplication::beep();
+	Refresh(true);
+}
+
 void game_list_frame::BatchRemoveShaderCaches()
 {
 	std::set<std::string> serials;
@@ -1302,7 +1433,7 @@ void game_list_frame::BatchRemoveShaderCaches()
 	QApplication::beep();
 }
 
-QPixmap game_list_frame::PaintedPixmap(const QImage& img, bool paint_config_icon, const QColor& compatibility_color)
+QPixmap game_list_frame::PaintedPixmap(const QImage& img, bool paint_config_icon, bool paint_pad_config_icon, const QColor& compatibility_color)
 {
 	const int device_pixel_ratio = devicePixelRatio();
 	const QSize original_size = img.size();
@@ -1318,11 +1449,26 @@ QPixmap game_list_frame::PaintedPixmap(const QImage& img, bool paint_config_icon
 		painter.drawImage(QPoint(0, 0), img);
 	}
 
-	if (paint_config_icon && !m_isListLayout)
+	if (!m_isListLayout && (paint_config_icon || paint_pad_config_icon))
 	{
 		const int width = original_size.width() * 0.2;
 		const QPoint origin = QPoint(original_size.width() - width, 0);
-		QImage custom_config_icon(":/Icons/custom_config_2.png");
+		QString icon_path;
+
+		if (paint_config_icon && paint_pad_config_icon)
+		{
+			icon_path = ":/Icons/combo_config_bordered.png";
+		}
+		else if (paint_config_icon)
+		{
+			icon_path = ":/Icons/custom_config_2.png";
+		}
+		else if (paint_pad_config_icon)
+		{
+			icon_path = ":/Icons/controllers_2.png";
+		}
+
+		QImage custom_config_icon(icon_path);
 		custom_config_icon.setDevicePixelRatio(device_pixel_ratio);
 		painter.drawImage(origin, custom_config_icon.scaled(QSize(width, width) * device_pixel_ratio, Qt::KeepAspectRatio, Qt::TransformationMode::SmoothTransformation));
 	}
@@ -1342,7 +1488,7 @@ QPixmap game_list_frame::PaintedPixmap(const QImage& img, bool paint_config_icon
 	return QPixmap::fromImage(image.scaled(m_Icon_Size * device_pixel_ratio, Qt::KeepAspectRatio, Qt::TransformationMode::SmoothTransformation));
 }
 
-void game_list_frame::ShowCustomConfigIcon(QTableWidgetItem* item, bool enabled)
+void game_list_frame::ShowCustomConfigIcon(QTableWidgetItem* item, config::type type)
 {
 	auto game = GetGameInfoFromItem(item);
 	if (game == nullptr)
@@ -1350,24 +1496,22 @@ void game_list_frame::ShowCustomConfigIcon(QTableWidgetItem* item, bool enabled)
 		return;
 	}
 
-	game->hasCustomConfig = enabled;
-	const QColor color = getGridCompatibilityColor(game->compat.color);
-	game->pxmap = PaintedPixmap(game->icon, enabled, color);
-
 	if (!m_isListLayout)
 	{
+		const QColor color = getGridCompatibilityColor(game->compat.color);
+		game->pxmap = PaintedPixmap(game->icon, game->hasCustomConfig, game->hasCustomPadConfig, color);
 		int r = m_xgrid->currentItem()->row(), c = m_xgrid->currentItem()->column();
 		m_xgrid->addItem(game->pxmap, qstr(game->info.name).simplified(), r, c);
 		m_xgrid->item(r, c)->setData(gui::game_role, QVariant::fromValue(game));
 	}
-	else if (enabled)
-	{
+	else if (game->hasCustomConfig && game->hasCustomPadConfig)
+		m_gameList->item(item->row(), gui::column_name)->setIcon(QIcon(":/Icons/combo_config_bordered.png"));
+	else if (game->hasCustomConfig)
 		m_gameList->item(item->row(), gui::column_name)->setIcon(QIcon(":/Icons/custom_config.png"));
-	}
+	else if (game->hasCustomPadConfig)
+		m_gameList->item(item->row(), gui::column_name)->setIcon(QIcon(":/Icons/controllers.png"));
 	else
-	{
 		m_gameList->setItem(item->row(), gui::column_name, new custom_table_widget_item(game->info.name));
-	}
 }
 
 void game_list_frame::ResizeIcons(const int& sliderPos)
@@ -1395,7 +1539,7 @@ void game_list_frame::RepaintIcons(const bool& fromSettings)
 	for (auto& game : m_game_data)
 	{
 		QColor color = getGridCompatibilityColor(game->compat.color);
-		game->pxmap = PaintedPixmap(game->icon, game->hasCustomConfig, color);
+		game->pxmap = PaintedPixmap(game->icon, game->hasCustomConfig, game->hasCustomPadConfig, color);
 	}
 
 	Refresh();
@@ -1560,10 +1704,18 @@ int game_list_frame::PopulateGameList()
 
 		// Title
 		custom_table_widget_item* title_item = new custom_table_widget_item(title);
-		if (game->hasCustomConfig)
+		if (game->hasCustomConfig && game->hasCustomPadConfig)
+		{
+			title_item->setIcon(QIcon(":/Icons/combo_config_bordered.png"));
+		}
+		else if (game->hasCustomConfig)
 		{
 			title_item->setIcon(QIcon(":/Icons/custom_config.png"));
 		}
+		else if (game->hasCustomPadConfig)
+		{
+			title_item->setIcon(QIcon(":/Icons/controllers.png"));
+		}
 
 		// Serial
 		custom_table_widget_item* serial_item = new custom_table_widget_item(game->info.serial);
diff --git a/rpcs3/rpcs3qt/game_list_frame.h b/rpcs3/rpcs3qt/game_list_frame.h
index 6d415eb5dc..f130f1130f 100644
--- a/rpcs3/rpcs3qt/game_list_frame.h
+++ b/rpcs3/rpcs3qt/game_list_frame.h
@@ -31,6 +31,15 @@ enum Category
 	Others,
 };
 
+namespace config
+{
+	enum class type
+	{
+		emu,
+		pad
+	};
+}
+
 namespace category // (see PARAM.SFO in psdevwiki.com) TODO: Disc Categories 
 {
 	// PS3 bootable
@@ -171,6 +180,7 @@ struct gui_game_info
 	QImage icon;
 	QPixmap pxmap;
 	bool hasCustomConfig;
+	bool hasCustomPadConfig;
 };
 
 typedef std::shared_ptr<gui_game_info> game_info;
@@ -215,6 +225,7 @@ public Q_SLOTS:
 	void BatchRemovePPUCaches();
 	void BatchRemoveSPUCaches();
 	void BatchRemoveCustomConfigurations();
+	void BatchRemoveCustomPadConfigurations();
 	void BatchRemoveShaderCaches();
 	void SetListMode(const bool& isList);
 	void SetSearchText(const QString& text);
@@ -234,9 +245,9 @@ protected:
 	void resizeEvent(QResizeEvent *event) override;
 	bool eventFilter(QObject *object, QEvent *event) override;
 private:
-	QPixmap PaintedPixmap(const QImage& img, bool paint_config_icon = false, const QColor& color = QColor());
+	QPixmap PaintedPixmap(const QImage& img, bool paint_config_icon = false, bool paint_pad_config_icon = false, const QColor& color = QColor());
 	QColor getGridCompatibilityColor(const QString& string);
-	void ShowCustomConfigIcon(QTableWidgetItem* item, bool enabled);
+	void ShowCustomConfigIcon(QTableWidgetItem* item, config::type type);
 	void PopulateGameGrid(int maxCols, const QSize& image_size, const QColor& image_color);
 	bool IsEntryVisible(const game_info& game);
 	void SortGameList();
@@ -244,7 +255,8 @@ private:
 	int PopulateGameList();
 	bool SearchMatchesApp(const std::string& name, const std::string& serial);
 
-	bool RemoveCustomConfiguration(const std::string& base_dir, bool is_interactive = false);
+	bool RemoveCustomConfiguration(const std::string& title_id, game_info game = nullptr, bool is_interactive = false);
+	bool RemoveCustomPadConfiguration(const std::string& title_id, game_info game = nullptr, bool is_interactive = false);
 	bool RemoveShadersCache(const std::string& base_dir, bool is_interactive = false);
 	bool RemovePPUCache(const std::string& base_dir, bool is_interactive = false);
 	bool RemoveSPUCache(const std::string& base_dir, bool is_interactive = false);
diff --git a/rpcs3/rpcs3qt/main_window.cpp b/rpcs3/rpcs3qt/main_window.cpp
index 6a1f628fc8..bbb57e8766 100644
--- a/rpcs3/rpcs3qt/main_window.cpp
+++ b/rpcs3/rpcs3qt/main_window.cpp
@@ -1247,6 +1247,7 @@ void main_window::CreateConnects()
 	connect(ui->batchRemoveSPUCachesAct, &QAction::triggered, m_gameListFrame, &game_list_frame::BatchRemoveSPUCaches);
 	connect(ui->batchRemoveShaderCachesAct, &QAction::triggered, m_gameListFrame, &game_list_frame::BatchRemoveShaderCaches);
 	connect(ui->batchRemoveCustomConfigurationsAct, &QAction::triggered, m_gameListFrame, &game_list_frame::BatchRemoveCustomConfigurations);
+	connect(ui->batchRemoveCustomPadConfigurationsAct, &QAction::triggered, m_gameListFrame, &game_list_frame::BatchRemoveCustomPadConfigurations);
 
 	connect(ui->sysPauseAct, &QAction::triggered, this, &main_window::OnPlayOrPause);
 	connect(ui->sysStopAct, &QAction::triggered, [=]() { Emu.Stop(); });
@@ -1282,20 +1283,19 @@ void main_window::CreateConnects()
 
 	auto openPadSettings = [this]
 	{
-		auto resetPadHandlers = [this](int/* result*/)
-		{
-			if (Emu.IsStopped())
-			{
-				return;
-			}
-			Emu.GetCallbacks().reset_pads();
-		};
 		if (!Emu.IsStopped())
 		{
 			Emu.GetCallbacks().enable_pads(false);
 		}
 		pad_settings_dialog dlg(this);
-		connect(&dlg, &QDialog::finished, resetPadHandlers);
+		connect(&dlg, &QDialog::finished, [this](int/* result*/)
+		{
+			if (Emu.IsStopped())
+			{
+				return;
+			}
+			Emu.GetCallbacks().reset_pads(Emu.GetTitleID());
+		});
 		dlg.exec();
 		if (!Emu.IsStopped())
 		{
diff --git a/rpcs3/rpcs3qt/main_window.ui b/rpcs3/rpcs3qt/main_window.ui
index c3e6967705..4075cdba42 100644
--- a/rpcs3/rpcs3qt/main_window.ui
+++ b/rpcs3/rpcs3qt/main_window.ui
@@ -141,7 +141,7 @@
      <x>0</x>
      <y>0</y>
      <width>1058</width>
-     <height>21</height>
+     <height>22</height>
     </rect>
    </property>
    <property name="contextMenuPolicy">
@@ -172,6 +172,7 @@
      <addaction name="batchCreatePPUCachesAct"/>
      <addaction name="separator"/>
      <addaction name="batchRemoveCustomConfigurationsAct"/>
+     <addaction name="batchRemoveCustomPadConfigurationsAct"/>
      <addaction name="batchRemovePPUCachesAct"/>
      <addaction name="batchRemoveSPUCachesAct"/>
      <addaction name="batchRemoveShaderCachesAct"/>
@@ -995,6 +996,11 @@
     <string>Remove Shader Caches</string>
    </property>
   </action>
+  <action name="batchRemoveCustomPadConfigurationsAct">
+   <property name="text">
+    <string>Remove Custom Pad Configurations</string>
+   </property>
+  </action>
  </widget>
  <layoutdefault spacing="6" margin="11"/>
  <resources>
diff --git a/rpcs3/rpcs3qt/pad_settings_dialog.cpp b/rpcs3/rpcs3qt/pad_settings_dialog.cpp
index edd7599914..df19f5092d 100644
--- a/rpcs3/rpcs3qt/pad_settings_dialog.cpp
+++ b/rpcs3/rpcs3qt/pad_settings_dialog.cpp
@@ -1,4 +1,4 @@
-#include <QCheckBox>
+#include <QCheckBox>
 #include <QGroupBox>
 #include <QPushButton>
 #include <QVBoxLayout>
@@ -29,19 +29,13 @@ constexpr auto qstr = QString::fromStdString;
 
 inline bool CreateConfigFile(const QString& dir, const QString& name)
 {
-	QString input_dir = qstr(fs::get_config_dir()) + "/InputConfigs/";
-	if (!QDir().mkdir(input_dir) && !QDir().exists(input_dir))
-	{
-		LOG_ERROR(GENERAL, "Failed to create dir %s", sstr(input_dir));
-		return false;
-	}
-	if (!QDir().mkdir(dir) && !QDir().exists(dir))
+	if (!QDir().mkpath(dir))
 	{
 		LOG_ERROR(GENERAL, "Failed to create dir %s", sstr(dir));
 		return false;
 	}
 
-	QString filename = dir + name + ".yml";
+	const QString filename = dir + name + ".yml";
 	QFile new_file(filename);
 
 	if (!new_file.open(QIODevice::WriteOnly))
@@ -54,16 +48,25 @@ inline bool CreateConfigFile(const QString& dir, const QString& name)
 	return true;
 };
 
-pad_settings_dialog::pad_settings_dialog(QWidget *parent)
+pad_settings_dialog::pad_settings_dialog(QWidget *parent, const GameInfo *game)
 	: QDialog(parent), ui(new Ui::pad_settings_dialog)
 {
 	ui->setupUi(this);
 
-	setWindowTitle(tr("Gamepads Settings"));
-
 	// load input config
 	g_cfg_input.from_default();
-	g_cfg_input.load();
+	
+	if (game)
+	{
+		m_title_id = game->serial;
+		g_cfg_input.load(game->serial);
+		setWindowTitle(tr("Gamepads Settings: [%0] %1").arg(qstr(game->serial)).arg(qstr(game->name).simplified()));
+	}
+	else
+	{
+		g_cfg_input.load();
+		setWindowTitle(tr("Gamepads Settings"));
+	}
 
 	// Create tab widget for 7 players
 	m_tabs = new QTabWidget;
@@ -153,7 +156,7 @@ pad_settings_dialog::pad_settings_dialog(QWidget *parent)
 				QMessageBox::warning(this, tr("Error"), tr("Please choose a non-existing name"));
 				continue;
 			}
-			if (CreateConfigFile(qstr(PadHandlerBase::get_config_dir(g_cfg_input.player[i]->handler)), friendlyName))
+			if (CreateConfigFile(qstr(PadHandlerBase::get_config_dir(g_cfg_input.player[i]->handler, m_title_id)), friendlyName))
 			{
 				ui->chooseProfile->addItem(friendlyName);
 				ui->chooseProfile->setCurrentText(friendlyName);
@@ -839,6 +842,7 @@ void pad_settings_dialog::OnPadButtonClicked(int id)
 
 void pad_settings_dialog::OnTabChanged(int index)
 {
+	// TODO: Do not save yet! But keep all profile changes until the dialog was saved.
 	// Save old profile
 	SaveProfile();
 
@@ -898,7 +902,7 @@ void pad_settings_dialog::ChangeInputType()
 	if (!g_cfg_input.player[player]->handler.from_string(handler))
 	{
 		// Something went wrong
-		LOG_ERROR(GENERAL, "Failed to convert input string:%s", handler);
+		LOG_ERROR(GENERAL, "Failed to convert input string: %s", handler);
 		return;
 	}
 
@@ -963,7 +967,7 @@ void pad_settings_dialog::ChangeInputType()
 			}
 		}
 
-		QString profile_dir = qstr(PadHandlerBase::get_config_dir(m_handler->m_type));
+		QString profile_dir = qstr(PadHandlerBase::get_config_dir(m_handler->m_type, m_title_id));
 		QStringList profiles = gui::utils::get_dir_entries(QDir(profile_dir), QStringList() << "*.yml");
 
 		if (profiles.isEmpty())
@@ -1021,7 +1025,7 @@ void pad_settings_dialog::ChangeProfile()
 	}
 
 	// Change handler
-	const std::string cfg_name = PadHandlerBase::get_config_dir(m_handler->m_type) + m_profile + ".yml";
+	const std::string cfg_name = PadHandlerBase::get_config_dir(m_handler->m_type, m_title_id) + m_profile + ".yml";
 
 	// Adjust to the different pad handlers
 	switch (m_handler->m_type)
@@ -1145,7 +1149,7 @@ void pad_settings_dialog::SaveExit()
 		g_cfg_input.player[i]->profile.from_default();
 	}
 
-	g_cfg_input.save();
+	g_cfg_input.save(m_title_id);
 
 	QDialog::accept();
 }
diff --git a/rpcs3/rpcs3qt/pad_settings_dialog.h b/rpcs3/rpcs3qt/pad_settings_dialog.h
index e14b00ad37..0541b7589d 100644
--- a/rpcs3/rpcs3qt/pad_settings_dialog.h
+++ b/rpcs3/rpcs3qt/pad_settings_dialog.h
@@ -8,6 +8,7 @@
 #include <QTimer>
 
 #include "Emu/Io/PadHandler.h"
+#include "Emu/GameInfo.h"
 
 namespace Ui
 {
@@ -85,7 +86,7 @@ class pad_settings_dialog : public QDialog
 	const QString Disconnected_suffix = tr(" (disconnected)");
 
 public:
-	explicit pad_settings_dialog(QWidget *parent = nullptr);
+	explicit pad_settings_dialog(QWidget *parent = nullptr, const GameInfo *game = nullptr);
 	~pad_settings_dialog();
 
 private Q_SLOTS:
@@ -100,6 +101,7 @@ private Q_SLOTS:
 
 private:
 	Ui::pad_settings_dialog *ui;
+	std::string m_title_id;
 
 	// TabWidget
 	QTabWidget* m_tabs;