diff --git a/pcsx2/GS.cpp b/pcsx2/GS.cpp
index a7a78cfb01..e99410d93e 100644
--- a/pcsx2/GS.cpp
+++ b/pcsx2/GS.cpp
@@ -577,6 +577,7 @@ __forceinline u32 gsRead32(u32 mem)
 
 __forceinline u64 gsRead64(u32 mem)
 {
+	// fixme - PS2GS_BASE(mem+4) = (g_RealGSMem+(mem + 4 & 0x13ff))
 	GIF_LOG("GS read 64 from %8.8lx  value: %8.8lx_%8.8lx\n", mem, *(u32*)PS2GS_BASE(mem+4), *(u32*)PS2GS_BASE(mem) );
 	return *(u64*)PS2GS_BASE(mem);
 }
@@ -854,7 +855,7 @@ void RunGSState( gzLoadingState& f )
 	list<GSStatePacket>::iterator it = packets.begin();
 	g_SaveGSStream = 3;
 
-	int skipfirst = 1;
+	//int skipfirst = 1;
 
 	// first extract the data
 	while(1) {
diff --git a/pcsx2/IPU/mpeg2lib/Mpeg.h b/pcsx2/IPU/mpeg2lib/Mpeg.h
index 8e81ac0a10..400662cb2a 100644
--- a/pcsx2/IPU/mpeg2lib/Mpeg.h
+++ b/pcsx2/IPU/mpeg2lib/Mpeg.h
@@ -189,11 +189,6 @@ void mpeg2_idct_init ();
 #ifdef _MSC_VER
 #define BigEndian(out, in) out = _byteswap_ulong(in)
 #else
-//#define BigEndian(out, in)  \
-//	__asm__(".intel_syntax\n"						\
-//		"bswap %0\n"								\
-//			".att_syntax\n" : "=r"(out) : "0"(in) )
-
 #define BigEndian(out, in) \
 	out = (((((in) >> 24) & 0xFF) <<  0) + ((((in) >> 16) & 0xFF) <<  8) + \
 		   ((((in) >>  8) & 0xFF) << 16) + ((((in) >>  0) & 0xFF) << 24));
diff --git a/pcsx2/IopMem.cpp b/pcsx2/IopMem.cpp
index 1511b269f9..84d5eee687 100644
--- a/pcsx2/IopMem.cpp
+++ b/pcsx2/IopMem.cpp
@@ -329,6 +329,8 @@ void psxMemWrite32(u32 mem, u32 value)
 // TLB functions
 
 #ifdef TLB_DEBUG_MEM
+// fixme - there are a few places in the code where this is called that really shouldn't receive null.
+// cdvdReadSector in CDVD.cpp, psxDma3 in CdRom.cpp, to name two.
 void* PSXM(u32 mem)
 {
     return (psxMemRLUT[(mem) >> 16] == 0 ? NULL : (void*)(psxMemRLUT[(mem) >> 16] + ((mem) & 0xffff)));
diff --git a/pcsx2/Linux/LnxConsole.cpp b/pcsx2/Linux/LnxConsole.cpp
index 8b3fe4fa65..4fbe04285e 100644
--- a/pcsx2/Linux/LnxConsole.cpp
+++ b/pcsx2/Linux/LnxConsole.cpp
@@ -20,15 +20,15 @@
 
 #define COLOR_RESET		"\033[0m"
 
+
 // Linux Note : The Linux Console is pretty simple.  It just dumps to the stdio!
 // (no console open/close/title stuff tho, so those functions are dummies)
 
-//  Fixme - A lot of extra \ns are being added in here somewhere. I think it's
-// partially in SetColor/ClearColor, as colored lines have more extra \ns then the other
-// lines.
+// Yeah, haven't really seen a need to add a console window, though I might
+// at some point. --arcum42
 namespace Console
 {
-static const char* tbl_color_codes[] =
+static const char *tbl_color_codes[] =
 {
 	"\033[30m"		// black
 	,	"\033[31m"		// red
@@ -69,7 +69,7 @@ __forceinline bool __fastcall Newline()
 __forceinline bool __fastcall Write(const char* fmt)
 {
 	if (Config.PsxOut)
-		puts(fmt);
+		fputs(fmt, stdout);
 
 	if (emuLog != NULL)
 		fputs(fmt, emuLog);
diff --git a/pcsx2/Linux/LnxSysExec.cpp b/pcsx2/Linux/LnxSysExec.cpp
index c6fb515440..673c176484 100644
--- a/pcsx2/Linux/LnxSysExec.cpp
+++ b/pcsx2/Linux/LnxSysExec.cpp
@@ -783,7 +783,7 @@ void SysRunGui()
 void *SysMmap(uptr base, u32 size)
 {
 	u8 *Mem;
-	Mem = mmap((uptr*)base, size, PROT_EXEC | PROT_READ | PROT_WRITE, MAP_PRIVATE | MAP_ANONYMOUS, 0, 0);
+	Mem = (u8*)mmap((uptr*)base, size, PROT_EXEC | PROT_READ | PROT_WRITE, MAP_PRIVATE | MAP_ANONYMOUS, 0, 0);
 	if (Mem == MAP_FAILED) Console::Notice("Mmap Failed!");
 
 	return Mem;
diff --git a/pcsx2/MTGS.cpp b/pcsx2/MTGS.cpp
index 4fe965e7e5..8927b028aa 100644
--- a/pcsx2/MTGS.cpp
+++ b/pcsx2/MTGS.cpp
@@ -180,7 +180,8 @@ std::list<uint> ringposStack;
 // debug variable used to check for bad code bits where copies are started
 // but never closed, or closed without having been started.  (GSRingBufCopy calls
 // should always be followed by a call to GSRINGBUF_DONECOPY)
-static int copyLock = 0;
+// And it's not even used in the debug code.
+//static int copyLock = 0;
 #endif
 
 typedef void (*GIFRegHandler)(const u32* data);
diff --git a/pcsx2/Misc.cpp b/pcsx2/Misc.cpp
index f32b0b318e..31b849103d 100644
--- a/pcsx2/Misc.cpp
+++ b/pcsx2/Misc.cpp
@@ -782,7 +782,9 @@ void injectIRX(const char *filename)
 // It might even be a good idea to just go ahead and move them into Win32/Linux
 // specific files since they're all #ifdef'd that way anyways.
 
+#ifdef _WIN32
 static LARGE_INTEGER lfreq;
+#endif
 
 void InitCPUTicks()
 {
diff --git a/pcsx2/Patch.cpp b/pcsx2/Patch.cpp
index 9228e64672..c0c92bfd09 100644
--- a/pcsx2/Patch.cpp
+++ b/pcsx2/Patch.cpp
@@ -324,18 +324,22 @@ void _applypatch(int place, IniPatch *p) {
 			}
 		}
 		break;
-	case CPU_IOP: { 
-		switch (p->type) {
-			case BYTE_T:
-				psxMemWrite8(p->addr, (u8)p->data);
-				break;
-			case SHORT_T:
-				psxMemWrite16(p->addr, (u16)p->data);
-				break;
-			case WORD_T:
-				psxMemWrite32(p->addr, (u32)p->data);
-				break;
-		}
+		case CPU_IOP: { 
+			switch (p->type) {
+				case BYTE_T:
+					psxMemWrite8(p->addr, (u8)p->data);
+					break;
+				case SHORT_T:
+					psxMemWrite16(p->addr, (u16)p->data);
+					break;
+				case WORD_T:
+					psxMemWrite32(p->addr, (u32)p->data);
+					break;
+				default:
+					break;
+			}
+		default:
+			break;
 	}
 	}
 }
diff --git a/pcsx2/R5900.cpp b/pcsx2/R5900.cpp
index 02bc967fcc..bebef8189a 100644
--- a/pcsx2/R5900.cpp
+++ b/pcsx2/R5900.cpp
@@ -42,7 +42,7 @@ using namespace R5900;	// for R5900 disasm tools
 s32 EEsCycle;		// used to sync the IOP to the EE
 u32 EEoCycle;
 
-static int inter;
+//static int inter;
 
 PCSX2_ALIGNED16(cpuRegisters cpuRegs);
 PCSX2_ALIGNED16(fpuRegisters fpuRegs);
diff --git a/pcsx2/Stats.cpp b/pcsx2/Stats.cpp
index e3a8046175..5cb52bab9e 100644
--- a/pcsx2/Stats.cpp
+++ b/pcsx2/Stats.cpp
@@ -59,8 +59,8 @@ void statsClose() {
 }
 
 void statsVSync() {
-	static u64 accum = 0, accumvu1 = 0;
-	static u32 frame = 0;
+	//static u64 accum = 0, accumvu1 = 0;
+	//static u32 frame = 0;
 
 	stats.eeCycles+= cpuRegs.cycle - stats.eeSCycle;
 	stats.eeSCycle = cpuRegs.cycle;
diff --git a/pcsx2/x86/iMMI.cpp b/pcsx2/x86/iMMI.cpp
index 37e92fa4bf..6eec308140 100644
--- a/pcsx2/x86/iMMI.cpp
+++ b/pcsx2/x86/iMMI.cpp
@@ -177,7 +177,7 @@ void recPLZCW()
 	GPR_DEL_CONST(_Rd_);
 }
 
-static u32 PCSX2_ALIGNED16(s_CmpMasks[]) = { 0x0000ffff, 0x0000ffff, 0x0000ffff, 0x0000ffff };
+//static u32 PCSX2_ALIGNED16(s_CmpMasks[]) = { 0x0000ffff, 0x0000ffff, 0x0000ffff, 0x0000ffff };
 
 void recPMFHL()
 {
diff --git a/pcsx2/x86/iVUmicroUpper.cpp b/pcsx2/x86/iVUmicroUpper.cpp
index 6cc983ca2c..7bd92bdc7e 100644
--- a/pcsx2/x86/iVUmicroUpper.cpp
+++ b/pcsx2/x86/iVUmicroUpper.cpp
@@ -327,7 +327,6 @@ void recUpdateFlags(VURegs * VU, int reg, int info)
 //------------------------------------------------------------------
 static PCSX2_ALIGNED16(u32 VU_addsuband[2][4]);
 static PCSX2_ALIGNED16(u32 VU_addsub_reg[2][4]);
-static u32 ecx_temp_loc;
 
 void VU_ADD_SUB(u32 regd, u32 regt, int is_sub, int info)  
 {
diff --git a/pcsx2/x86/ix86-32/iR5900-32.cpp b/pcsx2/x86/ix86-32/iR5900-32.cpp
index e3e442e35a..cc174c79f2 100644
--- a/pcsx2/x86/ix86-32/iR5900-32.cpp
+++ b/pcsx2/x86/ix86-32/iR5900-32.cpp
@@ -234,6 +234,7 @@ static void iDumpBlock( int startpc, u8 * ptr )
 	fclose( f );
 }
 
+#ifdef PCSX2_VM_COISSUE
 static u8 _eeLoadWritesRs(u32 tempcode)
 {
 	switch(tempcode>>26) {
@@ -294,6 +295,7 @@ static u8 _eeIsLoadStoreCoX(u32 tempcode)
 	}
 	return 0;
 }
+#endif
 
 void _eeFlushAllUnused()
 {
@@ -627,6 +629,7 @@ static void recShutdown( void )
 	x86Shutdown();
 }
 
+// Ignored by Linux
 #pragma warning(disable:4731) // frame pointer register 'ebp' modified by inline assembly code
 
 void recStep( void ) {
diff --git a/pcsx2/x86/ix86-32/iR5900Arit.cpp b/pcsx2/x86/ix86-32/iR5900Arit.cpp
index 0debf6f069..ed4c4309bc 100644
--- a/pcsx2/x86/ix86-32/iR5900Arit.cpp
+++ b/pcsx2/x86/ix86-32/iR5900Arit.cpp
@@ -1274,7 +1274,7 @@ void recSLT_const()
 }
 
 static u32 s_sltconst = 0x80000000;
-static u32 s_sltconst64[2] = {0, 0x80000000};
+//static u32 s_sltconst64[2] = {0, 0x80000000};
 u32 s_sltone = 1;
 
 void recSLTs_consts(int info, int sign)