diff --git a/pcsx2/pcsx2.vcxproj b/pcsx2/pcsx2.vcxproj
index 8a9dadc393..93beddd4d6 100644
--- a/pcsx2/pcsx2.vcxproj
+++ b/pcsx2/pcsx2.vcxproj
@@ -71,19 +71,19 @@
     </Link>
   </ItemDefinitionGroup>
   <ItemGroup>
-    <None Include="GS\res\glsl\common_header.glsl" />
-    <None Include="GS\res\glsl\convert.glsl" />
-    <None Include="GS\res\glsl\interlace.glsl" />
-    <None Include="GS\res\glsl\merge.glsl" />
-    <None Include="GS\res\glsl\shadeboost.glsl" />
-    <None Include="GS\res\glsl\tfx_fs.glsl" />
-    <None Include="GS\res\glsl\tfx_vgs.glsl" />
-    <None Include="GS\res\convert.fx" />
-    <None Include="GS\res\fxaa.fx" />
-    <None Include="GS\res\interlace.fx" />
-    <None Include="GS\res\merge.fx" />
-    <None Include="GS\res\shadeboost.fx" />
-    <None Include="GS\res\tfx.fx" />
+    <None Include="..\bin\resources\shaders\opengl\common_header.glsl" />
+    <None Include="..\bin\resources\shaders\opengl\convert.glsl" />
+    <None Include="..\bin\resources\shaders\opengl\interlace.glsl" />
+    <None Include="..\bin\resources\shaders\opengl\merge.glsl" />
+    <None Include="..\bin\resources\shaders\opengl\shadeboost.glsl" />
+    <None Include="..\bin\resources\shaders\opengl\tfx_fs.glsl" />
+    <None Include="..\bin\resources\shaders\opengl\tfx_vgs.glsl" />
+    <None Include="..\bin\resources\shaders\dx11\convert.fx" />
+    <None Include="..\bin\resources\shaders\common\fxaa.fx" />
+    <None Include="..\bin\resources\shaders\dx11\interlace.fx" />
+    <None Include="..\bin\resources\shaders\dx11\merge.fx" />
+    <None Include="..\bin\resources\shaders\dx11\shadeboost.fx" />
+    <None Include="..\bin\resources\shaders\dx11\tfx.fx" />
     <None Include="PAD\Windows\Default.ini" />
     <None Include="Utilities\folderdesc.txt" />
     <None Include="Docs\License.txt" />
diff --git a/pcsx2/pcsx2.vcxproj.filters b/pcsx2/pcsx2.vcxproj.filters
index 674bbf8310..de9b7bd909 100644
--- a/pcsx2/pcsx2.vcxproj.filters
+++ b/pcsx2/pcsx2.vcxproj.filters
@@ -330,43 +330,43 @@
     <None Include="PAD\Windows\Default.ini">
       <Filter>System\Ps2\PAD</Filter>
     </None>
-    <None Include="GS\res\glsl\common_header.glsl">
+    <None Include="..\bin\resources\shaders\opengl\common_header.glsl">
       <Filter>System\Ps2\GS\Shaders</Filter>
     </None>
-    <None Include="GS\res\glsl\convert.glsl">
+    <None Include="..\bin\resources\shaders\opengl\convert.glsl">
       <Filter>System\Ps2\GS\Shaders</Filter>
     </None>
-    <None Include="GS\res\glsl\interlace.glsl">
+    <None Include="..\bin\resources\shaders\opengl\interlace.glsl">
       <Filter>System\Ps2\GS\Shaders</Filter>
     </None>
-    <None Include="GS\res\glsl\merge.glsl">
+    <None Include="..\bin\resources\shaders\opengl\merge.glsl">
       <Filter>System\Ps2\GS\Shaders</Filter>
     </None>
-    <None Include="GS\res\glsl\shadeboost.glsl">
+    <None Include="..\bin\resources\shaders\opengl\shadeboost.glsl">
       <Filter>System\Ps2\GS\Shaders</Filter>
     </None>
-    <None Include="GS\res\glsl\tfx_fs.glsl">
+    <None Include="..\bin\resources\shaders\opengl\tfx_fs.glsl">
       <Filter>System\Ps2\GS\Shaders</Filter>
     </None>
-    <None Include="GS\res\glsl\tfx_vgs.glsl">
+    <None Include="..\bin\resources\shaders\opengl\tfx_vgs.glsl">
       <Filter>System\Ps2\GS\Shaders</Filter>
     </None>
-    <None Include="GS\res\convert.fx">
+    <None Include="..\bin\resources\shaders\dx11\convert.fx">
       <Filter>System\Ps2\GS\Shaders</Filter>
     </None>
-    <None Include="GS\res\fxaa.fx">
+    <None Include="..\bin\resources\shaders\common\fxaa.fx">
       <Filter>System\Ps2\GS\Shaders</Filter>
     </None>
-    <None Include="GS\res\interlace.fx">
+    <None Include="..\bin\resources\shaders\dx11\interlace.fx">
       <Filter>System\Ps2\GS\Shaders</Filter>
     </None>
-    <None Include="GS\res\merge.fx">
+    <None Include="..\bin\resources\shaders\dx11\merge.fx">
       <Filter>System\Ps2\GS\Shaders</Filter>
     </None>
-    <None Include="GS\res\shadeboost.fx">
+    <None Include="..\bin\resources\shaders\dx11\shadeboost.fx">
       <Filter>System\Ps2\GS\Shaders</Filter>
     </None>
-    <None Include="GS\res\tfx.fx">
+    <None Include="..\bin\resources\shaders\dx11\tfx.fx">
       <Filter>System\Ps2\GS\Shaders</Filter>
     </None>
   </ItemGroup>