diff --git a/src/core/flags.h.in b/src/core/flags.h.in
index 4e9105b83..212c4828a 100644
--- a/src/core/flags.h.in
+++ b/src/core/flags.h.in
@@ -15,7 +15,7 @@
 #cmakedefine BUILD_GLES2
 #endif
 
-// COLOR flags
+// Miscellaneous flags
 
 #ifndef COLOR_16_BIT
 #cmakedefine COLOR_16_BIT
@@ -25,6 +25,14 @@
 #cmakedefine COLOR_5_6_5
 #endif
 
+#ifndef DISABLE_THREADING
+#cmakedefine DISABLE_THREADING
+#endif
+
+#ifndef FIXED_ROM_BUFFER
+#cmakedefine FIXED_ROM_BUFFER
+#endif
+
 // M_CORE flags
 
 #ifndef M_CORE_GBA
@@ -35,9 +43,13 @@
 #cmakedefine M_CORE_GB
 #endif
 
-// USE flags
+// ENABLE flags
 
-#ifndef MINIMAL_CORE
+#ifndef ENABLE_SCRIPTING
+#cmakedefine ENABLE_SCRIPTING
+#endif
+
+// USE flags
 
 #ifndef USE_DEBUGGERS
 #cmakedefine USE_DEBUGGERS
@@ -47,6 +59,10 @@
 #cmakedefine USE_EDITLINE
 #endif
 
+#ifndef USE_ELF
+#cmakedefine USE_ELF
+#endif
+
 #ifndef USE_EPOXY
 #cmakedefine USE_EPOXY
 #endif
@@ -96,5 +112,3 @@
 #endif
 
 #endif
-
-#endif