diff --git a/Source/Core/DolphinQt/ResourcePackManager.cpp b/Source/Core/DolphinQt/ResourcePackManager.cpp
index 2f7287afd0..719a4257b0 100644
--- a/Source/Core/DolphinQt/ResourcePackManager.cpp
+++ b/Source/Core/DolphinQt/ResourcePackManager.cpp
@@ -160,6 +160,12 @@ void ResourcePackManager::RepopulateTable()
   SelectionChanged();
 }
 
+// Revert the indicies as to be more intuitive for users
+int ResourcePackManager::GetResourcePackIndex(QTableWidgetItem* item) const
+{
+  return m_table_widget->rowCount() - 1 - item->row();
+}
+
 void ResourcePackManager::Change()
 {
   auto items = m_table_widget->selectedItems();
@@ -167,10 +173,14 @@ void ResourcePackManager::Change()
   if (items.empty())
     return;
 
-  if (ResourcePack::IsInstalled(ResourcePack::GetPacks()[items[0]->row()]))
+  if (ResourcePack::IsInstalled(ResourcePack::GetPacks()[GetResourcePackIndex(items[0])]))
+  {
     Uninstall();
+  }
   else
+  {
     Install();
+  }
 }
 
 void ResourcePackManager::Install()
@@ -180,7 +190,7 @@ void ResourcePackManager::Install()
   if (items.empty())
     return;
 
-  auto& item = ResourcePack::GetPacks()[m_table_widget->rowCount() - 1 - items[0]->row()];
+  auto& item = ResourcePack::GetPacks()[GetResourcePackIndex(items[0])];
 
   bool success = item.Install(File::GetUserPath(D_USER_IDX));
 
@@ -201,7 +211,7 @@ void ResourcePackManager::Uninstall()
   if (items.empty())
     return;
 
-  auto& item = ResourcePack::GetPacks()[m_table_widget->rowCount() - 1 - items[0]->row()];
+  auto& item = ResourcePack::GetPacks()[GetResourcePackIndex(items[0])];
 
   bool success = item.Uninstall(File::GetUserPath(D_USER_IDX));
 
@@ -232,8 +242,7 @@ void ResourcePackManager::Remove()
     return;
 
   Uninstall();
-  File::Delete(
-      ResourcePack::GetPacks()[m_table_widget->rowCount() - 1 - items[0]->row()].GetPath());
+  File::Delete(ResourcePack::GetPacks()[GetResourcePackIndex(items[0])].GetPath());
   RepopulateTable();
 }
 
@@ -244,7 +253,7 @@ void ResourcePackManager::PriorityDown()
   if (items.empty())
     return;
 
-  int row = m_table_widget->rowCount() - 1 - items[0]->row();
+  auto row = GetResourcePackIndex(items[0]);
 
   if (items[0]->row() >= m_table_widget->rowCount())
     return;
@@ -269,7 +278,7 @@ void ResourcePackManager::PriorityUp()
   if (items.empty())
     return;
 
-  int row = m_table_widget->rowCount() - 1 - items[0]->row();
+  auto row = GetResourcePackIndex(items[0]);
 
   if (items[0]->row() == 0)
     return;
@@ -301,9 +310,10 @@ void ResourcePackManager::SelectionChanged()
 
   if (has_selection)
   {
-    m_change_button->setText(ResourcePack::IsInstalled(ResourcePack::GetPacks()[items[0]->row()]) ?
-                                 tr("Uninstall") :
-                                 tr("Install"));
+    m_change_button->setText(
+        ResourcePack::IsInstalled(ResourcePack::GetPacks()[GetResourcePackIndex(items[0])]) ?
+            tr("Uninstall") :
+            tr("Install"));
   }
 
   for (auto* item : {m_change_button, m_remove_button})
diff --git a/Source/Core/DolphinQt/ResourcePackManager.h b/Source/Core/DolphinQt/ResourcePackManager.h
index 8d0d848f2c..067f23157d 100644
--- a/Source/Core/DolphinQt/ResourcePackManager.h
+++ b/Source/Core/DolphinQt/ResourcePackManager.h
@@ -31,6 +31,8 @@ private:
   void SelectionChanged();
   void ItemDoubleClicked(QTableWidgetItem* item);
 
+  int GetResourcePackIndex(QTableWidgetItem* item) const;
+
   QPushButton* m_open_directory_button;
   QPushButton* m_change_button;
   QPushButton* m_remove_button;
diff --git a/Source/Core/UICommon/ResourcePack/Manager.cpp b/Source/Core/UICommon/ResourcePack/Manager.cpp
index 03456d3428..a95d60a280 100644
--- a/Source/Core/UICommon/ResourcePack/Manager.cpp
+++ b/Source/Core/UICommon/ResourcePack/Manager.cpp
@@ -60,7 +60,8 @@ bool Init()
       continue;
     }
 
-    order->Set(packs[i].GetManifest()->GetID(), static_cast<u64>(i));
+    if (i < packs.size())
+      order->Set(packs[i].GetManifest()->GetID(), static_cast<u64>(i));
   }
 
   file.Save(packs_path);
diff --git a/Source/Core/UICommon/ResourcePack/ResourcePack.cpp b/Source/Core/UICommon/ResourcePack/ResourcePack.cpp
index 92282626d5..225714c1f4 100644
--- a/Source/Core/UICommon/ResourcePack/ResourcePack.cpp
+++ b/Source/Core/UICommon/ResourcePack/ResourcePack.cpp
@@ -265,8 +265,9 @@ bool ResourcePack::Uninstall(const std::string& path)
     // Check if a higher priority pack already provides a given texture, don't delete it
     for (const auto& pack : GetHigherPriorityPacks(*this))
     {
-      if (std::find(pack->GetTextures().begin(), pack->GetTextures().end(), texture) !=
-          pack->GetTextures().end())
+      if (::ResourcePack::IsInstalled(*pack) &&
+          std::find(pack->GetTextures().begin(), pack->GetTextures().end(), texture) !=
+              pack->GetTextures().end())
       {
         provided_by_other_pack = true;
         break;
@@ -279,8 +280,9 @@ bool ResourcePack::Uninstall(const std::string& path)
     // Check if a lower priority pack provides a given texture - if so, install it.
     for (auto& pack : lower)
     {
-      if (std::find(pack->GetTextures().rbegin(), pack->GetTextures().rend(), texture) !=
-          pack->GetTextures().rend())
+      if (::ResourcePack::IsInstalled(*pack) &&
+          std::find(pack->GetTextures().rbegin(), pack->GetTextures().rend(), texture) !=
+              pack->GetTextures().rend())
       {
         pack->Install(path);