diff --git a/Source/Core/VideoCommon/ShaderCache.cpp b/Source/Core/VideoCommon/ShaderCache.cpp
index eee7120fbe..8f9c99d39d 100644
--- a/Source/Core/VideoCommon/ShaderCache.cpp
+++ b/Source/Core/VideoCommon/ShaderCache.cpp
@@ -970,6 +970,12 @@ void ShaderCache::QueueUberShaderPipelines()
         static_cast<PrimitiveType>(gs_uid.GetUidData()->primitive_type));
     config.depth_state = RenderState::GetNoDepthTestingDepthState();
     config.blending_state = RenderState::GetNoBlendingBlendState();
+    if (ps_uid.GetUidData()->uint_output)
+    {
+      // uint_output is only ever enabled when logic ops are enabled.
+      config.blending_state.logicopenable = true;
+      config.blending_state.logicmode = BlendMode::AND;
+    }
 
     auto iter = m_gx_uber_pipeline_cache.find(config);
     if (iter != m_gx_uber_pipeline_cache.end())
@@ -986,13 +992,15 @@ void ShaderCache::QueueUberShaderPipelines()
       if (vuid.GetUidData()->num_texgens != puid.GetUidData()->num_texgens)
         return;
 
+      UberShader::PixelShaderUid cleared_puid = puid;
+      UberShader::ClearUnusedPixelShaderUidBits(m_api_type, m_host_config, &cleared_puid);
       EnumerateGeometryShaderUids([&](const GeometryShaderUid& guid) {
         if (guid.GetUidData()->numTexGens != vuid.GetUidData()->num_texgens ||
             (!guid.GetUidData()->IsPassthrough() && !m_host_config.backend_geometry_shaders))
         {
           return;
         }
-        QueueDummyPipeline(vuid, guid, puid);
+        QueueDummyPipeline(vuid, guid, cleared_puid);
       });
     });
   });