diff --git a/Source/Core/Core/Analytics.cpp b/Source/Core/Core/Analytics.cpp
index 6b28eeb153..af289b4ff5 100644
--- a/Source/Core/Core/Analytics.cpp
+++ b/Source/Core/Core/Analytics.cpp
@@ -132,18 +132,18 @@ void DolphinAnalytics::ReportGameStart()
 }
 
 // Keep in sync with enum class GameQuirk definition.
-constexpr std::array<const char*, 10> GAME_QUIRKS_NAMES{
-    "icache-matters",
-    "directly-reads-wiimote-input",
-    "uses-DVDLowStopLaser",
-    "uses-DVDLowOffset",
-    "uses-DVDLowReadDiskBca",
-    "uses-DVDLowRequestDiscStatus",
-    "uses-DVDLowRequestRetryNumber",
-    "uses-DVDLowSerMeasControl",
-    "uses-different-partition-command",
-    "uses-di-interrupt-command",
-};
+constexpr std::array<const char*, 12> GAME_QUIRKS_NAMES{"icache-matters",
+                                                        "directly-reads-wiimote-input",
+                                                        "uses-DVDLowStopLaser",
+                                                        "uses-DVDLowOffset",
+                                                        "uses-DVDLowReadDiskBca",
+                                                        "uses-DVDLowRequestDiscStatus",
+                                                        "uses-DVDLowRequestRetryNumber",
+                                                        "uses-DVDLowSerMeasControl",
+                                                        "uses-different-partition-command",
+                                                        "uses-di-interrupt-command",
+                                                        "mismatched-gpu-texgens-between-xf-and-bp",
+                                                        "mismatched-gpu-colors-between-xf-and-bp"};
 static_assert(GAME_QUIRKS_NAMES.size() == static_cast<u32>(GameQuirk::COUNT),
               "Game quirks names and enum definition are out of sync.");
 
diff --git a/Source/Core/Core/Analytics.h b/Source/Core/Core/Analytics.h
index f78cafbac6..94f7eb5a78 100644
--- a/Source/Core/Core/Analytics.h
+++ b/Source/Core/Core/Analytics.h
@@ -47,6 +47,13 @@ enum class GameQuirk
   // (DVDLowClearCoverInterrupt is used, though)
   USES_DI_INTERRUPT_MASK_COMMAND,
 
+  // Some games configure a mismatched number of texture coordinates or colors between the transform
+  // and TEV/BP stages of the rendering pipeline. Currently, Dolphin just skips over these objects
+  // as the hardware renderers are not equipped to handle the case where the registers between
+  // stages are mismatched.
+  MISMATCHED_GPU_TEXGENS_BETWEEN_XF_AND_BP,
+  MISMATCHED_GPU_COLORS_BETWEEN_XF_AND_BP,
+
   COUNT,
 };
 
diff --git a/Source/Core/VideoCommon/VertexManagerBase.cpp b/Source/Core/VideoCommon/VertexManagerBase.cpp
index c9be06cd48..ce80f0008a 100644
--- a/Source/Core/VideoCommon/VertexManagerBase.cpp
+++ b/Source/Core/VideoCommon/VertexManagerBase.cpp
@@ -14,6 +14,7 @@
 #include "Common/Logging/Log.h"
 #include "Common/MathUtil.h"
 
+#include "Core/Analytics.h"
 #include "Core/ConfigManager.h"
 
 #include "VideoCommon/BPMemory.h"
@@ -353,6 +354,31 @@ void VertexManagerBase::Flush()
 
   m_is_flushed = true;
 
+  if (xfmem.numTexGen.numTexGens != bpmem.genMode.numtexgens ||
+      xfmem.numChan.numColorChans != bpmem.genMode.numcolchans)
+  {
+    ERROR_LOG(VIDEO,
+              "Mismatched configuration between XF and BP stages - %u/%u texgens, %u/%u colors. "
+              "Skipping draw. Please report on the issue tracker.",
+              xfmem.numTexGen.numTexGens, bpmem.genMode.numtexgens.Value(),
+              xfmem.numChan.numColorChans, bpmem.genMode.numcolchans.Value());
+
+    // Analytics reporting so we can discover which games have this problem, that way when we
+    // eventually simulate the behavior we have test cases for it.
+    if (xfmem.numTexGen.numTexGens != bpmem.genMode.numtexgens)
+    {
+      DolphinAnalytics::Instance().ReportGameQuirk(
+          GameQuirk::MISMATCHED_GPU_TEXGENS_BETWEEN_XF_AND_BP);
+    }
+    if (xfmem.numChan.numColorChans != bpmem.genMode.numcolchans)
+    {
+      DolphinAnalytics::Instance().ReportGameQuirk(
+          GameQuirk::MISMATCHED_GPU_TEXGENS_BETWEEN_XF_AND_BP);
+    }
+
+    return;
+  }
+
 #if defined(_DEBUG) || defined(DEBUGFAST)
   PRIM_LOG("frame%d:\n texgen=%u, numchan=%u, dualtex=%u, ztex=%u, cole=%u, alpe=%u, ze=%u",
            g_ActiveConfig.iSaveTargetId, xfmem.numTexGen.numTexGens, xfmem.numChan.numColorChans,