diff --git a/Source/Core/Core/HotkeyManager.cpp b/Source/Core/Core/HotkeyManager.cpp
index 41d914bb06..425f504bc3 100644
--- a/Source/Core/Core/HotkeyManager.cpp
+++ b/Source/Core/Core/HotkeyManager.cpp
@@ -14,7 +14,6 @@
 #include "InputCommon/ControllerEmu/Control/Input.h"
 #include "InputCommon/ControllerEmu/ControlGroup/Buttons.h"
 #include "InputCommon/ControllerEmu/ControlGroup/ControlGroup.h"
-#include "InputCommon/ControllerEmu/Setting/BackgroundInputSetting.h"
 #include "InputCommon/ControllerEmu/Setting/BooleanSetting.h"
 #include "InputCommon/GCPadStatus.h"
 
@@ -228,11 +227,6 @@ ControllerEmu::ControlGroup* GetHotkeyGroup(HotkeyGroup group)
   return static_cast<HotkeyManager*>(s_config.GetController(0))->GetHotkeyGroup(group);
 }
 
-ControllerEmu::ControlGroup* GetOptionsGroup()
-{
-  return static_cast<HotkeyManager*>(s_config.GetController(0))->GetOptionsGroup();
-}
-
 void Shutdown()
 {
   s_config.ClearControllers();
@@ -272,12 +266,6 @@ HotkeyManager::HotkeyManager()
       m_keys[group]->controls.emplace_back(new ControllerEmu::Input(hotkey_labels[key]));
     }
   }
-
-  groups.emplace_back(m_options = new ControllerEmu::ControlGroup(_trans("Options")));
-  m_options->boolean_settings.emplace_back(
-      std::make_unique<ControllerEmu::BackgroundInputSetting>(_trans("Background Input")));
-  m_options->boolean_settings.emplace_back(std::make_unique<ControllerEmu::BooleanSetting>(
-      _trans("Iterative Input"), false, ControllerEmu::SettingType::VIRTUAL));
 }
 
 HotkeyManager::~HotkeyManager()
@@ -309,11 +297,6 @@ ControllerEmu::ControlGroup* HotkeyManager::GetHotkeyGroup(HotkeyGroup group) co
   return m_hotkey_groups[group];
 }
 
-ControllerEmu::ControlGroup* HotkeyManager::GetOptionsGroup() const
-{
-  return m_options;
-}
-
 int HotkeyManager::FindGroupByID(int id) const
 {
   const auto i = std::find_if(groups_info.begin(), groups_info.end(),
diff --git a/Source/Core/Core/HotkeyManager.h b/Source/Core/Core/HotkeyManager.h
index 443a3c0406..10dbb9ccf4 100644
--- a/Source/Core/Core/HotkeyManager.h
+++ b/Source/Core/Core/HotkeyManager.h
@@ -199,7 +199,6 @@ public:
   void GetInput(HotkeyStatus* const hk);
   std::string GetName() const override;
   ControllerEmu::ControlGroup* GetHotkeyGroup(HotkeyGroup group) const;
-  ControllerEmu::ControlGroup* GetOptionsGroup() const;
   int FindGroupByID(int id) const;
   int GetIndexForGroup(int group, int id) const;
   void LoadDefaults(const ControllerInterface& ciface) override;
@@ -207,7 +206,6 @@ public:
 private:
   ControllerEmu::Buttons* m_keys[NUM_HOTKEY_GROUPS];
   std::array<ControllerEmu::ControlGroup*, NUM_HOTKEY_GROUPS> m_hotkey_groups;
-  ControllerEmu::ControlGroup* m_options;
 };
 
 namespace HotkeyManagerEmu
@@ -218,7 +216,6 @@ void LoadConfig();
 
 InputConfig* GetConfig();
 ControllerEmu::ControlGroup* GetHotkeyGroup(HotkeyGroup group);
-ControllerEmu::ControlGroup* GetOptionsGroup();
 void GetStatus();
 bool IsEnabled();
 void Enable(bool enable_toggle);
diff --git a/Source/Core/DolphinWX/Input/HotkeyInputConfigDiag.cpp b/Source/Core/DolphinWX/Input/HotkeyInputConfigDiag.cpp
index b931dbadb1..4f0643672b 100644
--- a/Source/Core/DolphinWX/Input/HotkeyInputConfigDiag.cpp
+++ b/Source/Core/DolphinWX/Input/HotkeyInputConfigDiag.cpp
@@ -2,10 +2,12 @@
 // Licensed under GPLv2+
 // Refer to the license.txt file included.
 
+#include <wx/checkbox.h>
 #include <wx/notebook.h>
 #include <wx/panel.h>
 #include <wx/sizer.h>
 
+#include "Core/ConfigManager.h"
 #include "Core/HotkeyManager.h"
 #include "DolphinWX/Input/HotkeyInputConfigDiag.h"
 
@@ -24,7 +26,7 @@ HotkeyInputConfigDialog::HotkeyInputConfigDialog(wxWindow* parent, InputConfig&
   UpdateGUI();
 }
 
-wxBoxSizer* HotkeyInputConfigDialog::CreateMainSizer()
+wxSizer* HotkeyInputConfigDialog::CreateMainSizer()
 {
   const int space5 = FromDIP(5);
   auto* const main_sizer = new wxBoxSizer(wxVERTICAL);
@@ -41,24 +43,54 @@ wxBoxSizer* HotkeyInputConfigDialog::CreateMainSizer()
   return main_sizer;
 }
 
-wxBoxSizer* HotkeyInputConfigDialog::CreateDeviceRelatedSizer()
+void HotkeyInputConfigDialog::OnBackgroundInputChanged(wxCommandEvent& event)
+{
+  SConfig::GetInstance().m_BackgroundInput = event.IsChecked();
+}
+
+void HotkeyInputConfigDialog::OnIterativeInputChanged(wxCommandEvent& event)
+{
+  m_iterate = event.IsChecked();
+}
+
+wxSizer* HotkeyInputConfigDialog::CreateOptionsSizer()
+{
+  const int space3 = FromDIP(3);
+
+  auto background_input_checkbox = new wxCheckBox(this, wxID_ANY, _("Background Input"));
+  background_input_checkbox->SetValue(SConfig::GetInstance().m_BackgroundInput);
+  background_input_checkbox->Bind(wxEVT_CHECKBOX,
+                                  &HotkeyInputConfigDialog::OnBackgroundInputChanged, this);
+
+  auto iterative_input_checkbox = new wxCheckBox(this, wxID_ANY, _("Iterative Input"));
+  iterative_input_checkbox->SetValue(m_iterate);
+  iterative_input_checkbox->Bind(wxEVT_CHECKBOX, &HotkeyInputConfigDialog::OnIterativeInputChanged,
+                                 this);
+
+  auto sizer = new wxStaticBoxSizer(wxVERTICAL, this, _("Options"));
+  sizer->AddSpacer(space3);
+  sizer->Add(background_input_checkbox, 0, wxLEFT | wxRIGHT, space3);
+  sizer->AddSpacer(space3);
+  sizer->Add(iterative_input_checkbox, 0, wxLEFT | wxRIGHT, space3);
+  sizer->AddSpacer(space3);
+  return sizer;
+}
+
+wxSizer* HotkeyInputConfigDialog::CreateDeviceRelatedSizer()
 {
   const int space5 = FromDIP(5);
   auto* const enclosing_sizer = new wxBoxSizer(wxHORIZONTAL);
-  auto* const reset_sizer = CreaterResetGroupBox(wxVERTICAL);
-  auto* const options_group_box =
-      new ControlGroupBox(HotkeyManagerEmu::GetOptionsGroup(), this, this);
 
   enclosing_sizer->AddSpacer(space5);
   enclosing_sizer->Add(CreateDeviceProfileSizer(), 3, wxEXPAND);
-  enclosing_sizer->Add(reset_sizer, 0, wxEXPAND);
-  enclosing_sizer->Add(options_group_box, 1, wxEXPAND);
+  enclosing_sizer->Add(CreaterResetGroupBox(wxVERTICAL), 0, wxEXPAND);
+  enclosing_sizer->Add(CreateOptionsSizer(), 1, wxEXPAND);
   enclosing_sizer->AddSpacer(space5);
 
   return enclosing_sizer;
 }
 
-wxBoxSizer* HotkeyInputConfigDialog::CreateDeviceProfileSizer()
+wxSizer* HotkeyInputConfigDialog::CreateDeviceProfileSizer()
 {
   auto* const device_chooser = CreateDeviceChooserGroupBox();
   auto* const profile_chooser = CreateProfileChooserGroupBox();
diff --git a/Source/Core/DolphinWX/Input/HotkeyInputConfigDiag.h b/Source/Core/DolphinWX/Input/HotkeyInputConfigDiag.h
index d078f2a5c4..fa62a4f166 100644
--- a/Source/Core/DolphinWX/Input/HotkeyInputConfigDiag.h
+++ b/Source/Core/DolphinWX/Input/HotkeyInputConfigDiag.h
@@ -17,9 +17,10 @@ public:
                           bool using_debugger, int port_num = 0);
 
 private:
-  wxBoxSizer* CreateMainSizer();
-  wxBoxSizer* CreateDeviceRelatedSizer();
-  wxBoxSizer* CreateDeviceProfileSizer();
+  wxSizer* CreateMainSizer();
+  wxSizer* CreateDeviceRelatedSizer();
+  wxSizer* CreateDeviceProfileSizer();
+  wxSizer* CreateOptionsSizer();
 
   void InitializeNotebook();
   wxPanel* CreateGeneralPanel();
@@ -31,6 +32,9 @@ private:
   wxPanel* CreateSaveAndLoadStatePanel();
   wxPanel* CreateOtherStateManagementPanel();
 
+  void OnBackgroundInputChanged(wxCommandEvent& event);
+  void OnIterativeInputChanged(wxCommandEvent& event);
+
   wxNotebook* m_notebook;
   bool m_using_debugger;
 };