diff --git a/Source/Android/app/src/main/java/org/dolphinemu/dolphinemu/NativeLibrary.java b/Source/Android/app/src/main/java/org/dolphinemu/dolphinemu/NativeLibrary.java
index 38ea670f5e..992b670b1f 100644
--- a/Source/Android/app/src/main/java/org/dolphinemu/dolphinemu/NativeLibrary.java
+++ b/Source/Android/app/src/main/java/org/dolphinemu/dolphinemu/NativeLibrary.java
@@ -379,6 +379,11 @@ public final class NativeLibrary
 	/** Native EGL functions not exposed by Java bindings **/
 	public static native void eglBindAPI(int api);
 
+	/**
+	 * Provides a way to refresh the connections on Wiimotes
+	 */
+	public static native void RefreshWiimotes();
+
 	/**
 	 * The methods C++ uses to find references to Java classes and methods
 	 * are really expensive. Rather than calling them every time we want to
diff --git a/Source/Android/app/src/main/java/org/dolphinemu/dolphinemu/activities/EmulationActivity.java b/Source/Android/app/src/main/java/org/dolphinemu/dolphinemu/activities/EmulationActivity.java
index 2f38df3373..f90956dd9a 100644
--- a/Source/Android/app/src/main/java/org/dolphinemu/dolphinemu/activities/EmulationActivity.java
+++ b/Source/Android/app/src/main/java/org/dolphinemu/dolphinemu/activities/EmulationActivity.java
@@ -33,6 +33,7 @@ import org.dolphinemu.dolphinemu.fragments.SaveStateFragment;
 import org.dolphinemu.dolphinemu.ui.main.MainPresenter;
 import org.dolphinemu.dolphinemu.utils.Animations;
 import org.dolphinemu.dolphinemu.utils.Java_GCAdapter;
+import org.dolphinemu.dolphinemu.utils.Java_WiimoteAdapter;
 import org.dolphinemu.dolphinemu.utils.Log;
 
 import java.util.List;
@@ -120,6 +121,7 @@ public final class EmulationActivity extends AppCompatActivity
 		super.onCreate(savedInstanceState);
 
 		Java_GCAdapter.manager = (UsbManager) getSystemService(Context.USB_SERVICE);
+		Java_WiimoteAdapter.manager = (UsbManager) getSystemService(Context.USB_SERVICE);
 
 		// Picasso will take a while to load these big-ass screenshots. So don't run
 		// the animation until we say so.
@@ -392,6 +394,10 @@ public final class EmulationActivity extends AppCompatActivity
 				return;
 			}
 
+			case R.id.menu_refresh_wiimotes:
+				NativeLibrary.RefreshWiimotes();
+				return;
+
 			// Screenshot capturing
 			case R.id.menu_emulation_screenshot:
 				NativeLibrary.SaveScreenShot();
diff --git a/Source/Android/app/src/main/java/org/dolphinemu/dolphinemu/utils/Java_WiimoteAdapter.java b/Source/Android/app/src/main/java/org/dolphinemu/dolphinemu/utils/Java_WiimoteAdapter.java
new file mode 100644
index 0000000000..049f930cba
--- /dev/null
+++ b/Source/Android/app/src/main/java/org/dolphinemu/dolphinemu/utils/Java_WiimoteAdapter.java
@@ -0,0 +1,156 @@
+package org.dolphinemu.dolphinemu.utils;
+
+import android.app.Activity;
+import android.app.PendingIntent;
+import android.content.Intent;
+import android.hardware.usb.UsbConfiguration;
+import android.hardware.usb.UsbDevice;
+import android.hardware.usb.UsbDeviceConnection;
+import android.hardware.usb.UsbEndpoint;
+import android.hardware.usb.UsbInterface;
+import android.hardware.usb.UsbManager;
+
+import org.dolphinemu.dolphinemu.NativeLibrary;
+import org.dolphinemu.dolphinemu.services.USBPermService;
+
+import java.util.Arrays;
+import java.util.HashMap;
+import java.util.Iterator;
+import java.util.Map;
+
+public class Java_WiimoteAdapter
+{
+	final static int MAX_PAYLOAD = 23;
+	final static int MAX_WIIMOTES = 4;
+	final static int TIMEOUT = 200;
+	final static short NINTENDO_VENDOR_ID = 0x057e;
+	final static short NINTENDO_WIIMOTE_PRODUCT_ID = 0x0306;
+	public static UsbManager manager;
+
+	static UsbDeviceConnection usb_con;
+	static UsbInterface[] usb_intf = new UsbInterface[MAX_WIIMOTES];
+	static UsbEndpoint[] usb_in = new UsbEndpoint[MAX_WIIMOTES];
+
+	public static byte[][] wiimote_payload = new byte[MAX_WIIMOTES][MAX_PAYLOAD];
+
+	private static void RequestPermission()
+	{
+		HashMap<String, UsbDevice> devices = manager.getDeviceList();
+		for (Map.Entry<String, UsbDevice> pair : devices.entrySet())
+		{
+			UsbDevice dev = (UsbDevice) pair.getValue();
+			if (dev.getProductId() == NINTENDO_WIIMOTE_PRODUCT_ID && dev.getVendorId() == NINTENDO_VENDOR_ID)
+			{
+				if (!manager.hasPermission(dev))
+				{
+					Log.warning("Requesting permission for Wiimote adapter");
+					Intent intent = new Intent();
+					PendingIntent pend_intent;
+					intent.setClass(NativeLibrary.sEmulationActivity, USBPermService.class);
+					pend_intent = PendingIntent.getService(NativeLibrary.sEmulationActivity, 0, intent, 0);
+					manager.requestPermission(dev, pend_intent);
+				}
+			}
+		}
+	}
+
+	public static boolean QueryAdapter()
+	{
+		HashMap<String, UsbDevice> devices = manager.getDeviceList();
+		for (Map.Entry<String, UsbDevice> pair : devices.entrySet())
+		{
+			UsbDevice dev = (UsbDevice) pair.getValue();
+			if (dev.getProductId() == NINTENDO_WIIMOTE_PRODUCT_ID && dev.getVendorId() == NINTENDO_VENDOR_ID)
+			{
+				if (manager.hasPermission(dev))
+					return true;
+				else
+					RequestPermission();
+			}
+		}
+		return false;
+	}
+
+	public static int Input(int index)
+	{
+		return usb_con.bulkTransfer(usb_in[index], wiimote_payload[index], MAX_PAYLOAD, TIMEOUT);
+	}
+
+	public static int Output(int index, byte[] buf, int size)
+	{
+		byte report_number = buf[0];
+
+		// Remove the report number from the buffer
+		buf = Arrays.copyOfRange(buf, 1, buf.length);
+		size--;
+
+		final int LIBUSB_REQUEST_TYPE_CLASS  = (1 << 5);
+		final int LIBUSB_RECIPIENT_INTERFACE = 0x1;
+		final int LIBUSB_ENDPOINT_OUT        = 0;
+
+		final int HID_SET_REPORT = 0x9;
+		final int HID_OUTPUT     = (2 << 8);
+
+		int write = usb_con.controlTransfer(
+				LIBUSB_REQUEST_TYPE_CLASS | LIBUSB_RECIPIENT_INTERFACE | LIBUSB_ENDPOINT_OUT,
+				HID_SET_REPORT,
+				HID_OUTPUT | report_number,
+				index,
+				buf, size,
+				1000);
+
+		if (write < 0)
+			return -1;
+
+		return write + 1;
+	}
+
+	public static boolean OpenAdapter()
+	{
+		// If the adapter is already open. Don't attempt to do it again
+		if (usb_con != null && usb_con.getFileDescriptor() != -1)
+			return true;
+
+		HashMap<String, UsbDevice> devices = manager.getDeviceList();
+		for (Map.Entry<String, UsbDevice> pair : devices.entrySet())
+		{
+			UsbDevice dev = (UsbDevice) pair.getValue();
+			if (dev.getProductId() == NINTENDO_WIIMOTE_PRODUCT_ID && dev.getVendorId() == NINTENDO_VENDOR_ID)
+			{
+				if (manager.hasPermission(dev))
+				{
+					usb_con = manager.openDevice(dev);
+					UsbConfiguration conf = dev.getConfiguration(0);
+
+					Log.info("Number of configurations: " + dev.getConfigurationCount());
+					Log.info("Number of Interfaces: " + dev.getInterfaceCount());
+					Log.info("Number of Interfaces from conf: " + conf.getInterfaceCount());
+
+					// Sometimes the interface count is returned as zero.
+					// Means the device needs to be unplugged and plugged back in again
+					if (dev.getInterfaceCount() > 0)
+					{
+						for (int i = 0; i < MAX_WIIMOTES; ++i)
+						{
+							// One interface per Wiimote
+							usb_intf[i] = dev.getInterface(i);
+							usb_con.claimInterface(usb_intf[i], true);
+
+							// One endpoint per Wiimote. Input only
+							// Output reports go through the control channel.
+							usb_in[i] = usb_intf[i].getEndpoint(0);
+							Log.info("Interface " + i + " endpoint count:" + usb_intf[i].getEndpointCount());
+						}
+						return true;
+					}
+					else
+					{
+						// XXX: Message that the device was found, but it needs to be unplugged and plugged back in?
+						usb_con.close();
+					}
+				}
+			}
+		}
+		return false;
+	}
+}
diff --git a/Source/Android/app/src/main/res/layout/fragment_ingame_menu.xml b/Source/Android/app/src/main/res/layout/fragment_ingame_menu.xml
index 44093dc324..e218fac5b5 100644
--- a/Source/Android/app/src/main/res/layout/fragment_ingame_menu.xml
+++ b/Source/Android/app/src/main/res/layout/fragment_ingame_menu.xml
@@ -59,6 +59,11 @@
                 android:text="@string/settings"
                 style="@style/InGameMenuOption"/>
 
+            <Button
+                android:id="@+id/menu_refresh_wiimotes"
+                android:text="@string/emulation_refresh_wiimotes"
+                style="@style/InGameMenuOption"/>
+
             <Button
                 android:id="@+id/menu_exit"
                 android:text="@string/overlay_exit_emulation"
diff --git a/Source/Android/app/src/main/res/values/strings.xml b/Source/Android/app/src/main/res/values/strings.xml
index 4ae5e14c12..e3e309ca73 100644
--- a/Source/Android/app/src/main/res/values/strings.xml
+++ b/Source/Android/app/src/main/res/values/strings.xml
@@ -346,6 +346,7 @@
     <string name="emulation_toggle_input">Toggle Touch Controls</string>
     <string name="emulation_quicksave">Quick Save</string>
     <string name="emulation_quickload">Quick Load</string>
+    <string name="emulation_refresh_wiimotes">Refresh Wiimotes</string>
     
     <!-- GC Adapter Menu-->
     <string name="gc_adapter_rumble">Enable Vibration</string>
diff --git a/Source/Android/jni/MainAndroid.cpp b/Source/Android/jni/MainAndroid.cpp
index ffa0eca40a..7d2849c96e 100644
--- a/Source/Android/jni/MainAndroid.cpp
+++ b/Source/Android/jni/MainAndroid.cpp
@@ -27,6 +27,7 @@
 #include "Core/Host.h"
 #include "Core/State.h"
 #include "Core/HW/Wiimote.h"
+#include "Core/HW/WiimoteReal/WiimoteReal.h"
 #include "Core/PowerPC/JitInterface.h"
 #include "Core/PowerPC/PowerPC.h"
 #include "Core/PowerPC/Profiler.h"
@@ -632,6 +633,10 @@ JNIEXPORT void JNICALL Java_org_dolphinemu_dolphinemu_NativeLibrary_SurfaceDestr
 		Renderer::s_ChangedSurface.Wait();
 	}
 }
+JNIEXPORT void JNICALL Java_org_dolphinemu_dolphinemu_NativeLibrary_RefreshWiimotes(JNIEnv *env, jobject obj)
+{
+	WiimoteReal::Refresh();
+}
 
 JNIEXPORT void JNICALL Java_org_dolphinemu_dolphinemu_NativeLibrary_Run(JNIEnv *env, jobject obj)
 {
@@ -646,6 +651,8 @@ JNIEXPORT void JNICALL Java_org_dolphinemu_dolphinemu_NativeLibrary_Run(JNIEnv *
 	UICommon::SetUserDirectory(g_set_userpath);
 	UICommon::Init();
 
+	WiimoteReal::InitAdapterClass();
+
 	// No use running the loop when booting fails
 	if ( BootManager::BootCore( g_filename.c_str() ) )
 	{
diff --git a/Source/Core/Core/CMakeLists.txt b/Source/Core/Core/CMakeLists.txt
index b035b64859..4fe1353d23 100644
--- a/Source/Core/Core/CMakeLists.txt
+++ b/Source/Core/Core/CMakeLists.txt
@@ -256,6 +256,8 @@ elseif(UNIX)
 	if(${CMAKE_SYSTEM_NAME} STREQUAL "Linux" AND BLUEZ_FOUND)
 		set(SRCS ${SRCS} HW/WiimoteReal/IONix.cpp)
 		set(LIBS ${LIBS} bluetooth)
+	elseif(ANDROID)
+		set(SRCS ${SRCS} HW/WiimoteReal/IOAndroid.cpp)
 	else()
 		set(SRCS ${SRCS} HW/WiimoteReal/IODummy.cpp)
 	endif()
diff --git a/Source/Core/Core/HW/WiimoteReal/IOAndroid.cpp b/Source/Core/Core/HW/WiimoteReal/IOAndroid.cpp
new file mode 100644
index 0000000000..7a2e1e249c
--- /dev/null
+++ b/Source/Core/Core/HW/WiimoteReal/IOAndroid.cpp
@@ -0,0 +1,165 @@
+// Copyright 2016 Dolphin Emulator Project
+// Licensed under GPLv2+
+// Refer to the license.txt file included.
+
+#include <jni.h>
+
+#include "Common/CommonTypes.h"
+#include "Common/Event.h"
+#include "Common/Flag.h"
+#include "Common/StringUtil.h"
+#include "Common/Thread.h"
+#include "Common/Timer.h"
+#include "Common/Logging/Log.h"
+
+#include "Core/HW/WiimoteReal/WiimoteReal.h"
+
+// Global java_vm class
+extern JavaVM* g_java_vm;
+
+namespace WiimoteReal
+{
+
+// Java classes
+static jclass s_adapter_class;
+
+class WiimoteAndroid final : public Wiimote
+{
+public:
+	WiimoteAndroid(int index);
+	~WiimoteAndroid() override;
+
+protected:
+	bool ConnectInternal() override;
+	void DisconnectInternal() override;
+	bool IsConnected() const override;
+	void IOWakeup() {}
+	int IORead(u8* buf) override;
+	int IOWrite(u8 const* buf, size_t len) override;
+
+private:
+	int m_mayflash_index;
+	bool is_connected = true;
+
+	JNIEnv* m_env;
+
+	jmethodID m_input_func;
+	jmethodID m_output_func;
+
+	jbyteArray m_java_wiimote_payload;
+};
+
+WiimoteScanner::WiimoteScanner()
+{}
+
+WiimoteScanner::~WiimoteScanner()
+{}
+
+void WiimoteScanner::Update()
+{}
+
+void WiimoteScanner::FindWiimotes(std::vector<Wiimote*>& found_wiimotes, Wiimote*& found_board)
+{
+	found_wiimotes.clear();
+	found_board = nullptr;
+
+	NOTICE_LOG(WIIMOTE, "Finding Wiimotes");
+
+	JNIEnv* env;
+	int get_env_status = g_java_vm->GetEnv(reinterpret_cast<void**>(&env), JNI_VERSION_1_6);
+
+	if (get_env_status == JNI_EDETACHED)
+		g_java_vm->AttachCurrentThread(&env, nullptr);
+
+	jmethodID openadapter_func = env->GetStaticMethodID(s_adapter_class, "OpenAdapter", "()Z");
+	jmethodID queryadapter_func = env->GetStaticMethodID(s_adapter_class, "QueryAdapter", "()Z");
+
+	if (env->CallStaticBooleanMethod(s_adapter_class, queryadapter_func) &&
+	    env->CallStaticBooleanMethod(s_adapter_class, openadapter_func))
+	{
+		for (int i = 0; i < MAX_WIIMOTES; ++i)
+			found_wiimotes.emplace_back(new WiimoteAndroid(i));
+	}
+
+	if (get_env_status == JNI_EDETACHED)
+		g_java_vm->DetachCurrentThread();
+}
+
+bool WiimoteScanner::IsReady() const
+{
+	return true;
+}
+
+WiimoteAndroid::WiimoteAndroid(int index)
+	: Wiimote(), m_mayflash_index(index)
+{
+}
+
+WiimoteAndroid::~WiimoteAndroid()
+{
+	Shutdown();
+}
+
+// Connect to a Wiimote with a known address.
+bool WiimoteAndroid::ConnectInternal()
+{
+	g_java_vm->AttachCurrentThread(&m_env, nullptr);
+
+	jfieldID payload_field = m_env->GetStaticFieldID(s_adapter_class, "wiimote_payload", "[[B");
+	jobjectArray payload_object = reinterpret_cast<jobjectArray>(m_env->GetStaticObjectField(s_adapter_class, payload_field));
+	m_java_wiimote_payload = (jbyteArray)m_env->GetObjectArrayElement(payload_object, m_mayflash_index);
+
+	// Get function pointers
+	m_input_func = m_env->GetStaticMethodID(s_adapter_class, "Input", "(I)I");
+	m_output_func = m_env->GetStaticMethodID(s_adapter_class, "Output", "(I[BI)I");
+
+	is_connected = true;
+
+	return true;
+}
+
+void WiimoteAndroid::DisconnectInternal()
+{
+	g_java_vm->DetachCurrentThread();
+}
+
+bool WiimoteAndroid::IsConnected() const
+{
+	return is_connected;
+}
+
+// positive = read packet
+// negative = didn't read packet
+// zero = error
+int WiimoteAndroid::IORead(u8* buf)
+{
+	int read_size = m_env->CallStaticIntMethod(s_adapter_class, m_input_func, m_mayflash_index);
+	jbyte* java_data = m_env->GetByteArrayElements(m_java_wiimote_payload, nullptr);
+	memcpy(buf + 1, java_data, std::min(MAX_PAYLOAD - 1, read_size));
+	buf[0] = 0xA1;
+	m_env->ReleaseByteArrayElements(m_java_wiimote_payload, java_data, 0);
+	return read_size <= 0 ? read_size : read_size + 1;
+}
+
+
+int WiimoteAndroid::IOWrite(u8 const* buf, size_t len)
+{
+	jbyteArray output_array = m_env->NewByteArray(len);
+	jbyte* output = m_env->GetByteArrayElements(output_array, nullptr);
+	memcpy(output, buf, len);
+	m_env->ReleaseByteArrayElements(output_array, output, 0);
+	int written = m_env->CallStaticIntMethod(s_adapter_class, m_output_func, m_mayflash_index, output_array, len);
+	m_env->DeleteLocalRef(output_array);
+	return written;
+}
+
+void InitAdapterClass()
+{
+	JNIEnv* env;
+	g_java_vm->AttachCurrentThread(&env, nullptr);
+
+	jclass adapter_class = env->FindClass("org/dolphinemu/dolphinemu/utils/Java_WiimoteAdapter");
+	s_adapter_class = reinterpret_cast<jclass>(env->NewGlobalRef(adapter_class));
+}
+
+}
diff --git a/Source/Core/Core/HW/WiimoteReal/WiimoteReal.h b/Source/Core/Core/HW/WiimoteReal/WiimoteReal.h
index 1ca31a8d69..60c5e38bbb 100644
--- a/Source/Core/Core/HW/WiimoteReal/WiimoteReal.h
+++ b/Source/Core/Core/HW/WiimoteReal/WiimoteReal.h
@@ -161,4 +161,8 @@ void ChangeWiimoteSource(unsigned int index, int source);
 bool IsValidBluetoothName(const std::string& name);
 bool IsBalanceBoardName(const std::string& name);
 
+#ifdef ANDROID
+void InitAdapterClass();
+#endif
+
 } // WiimoteReal