diff --git a/Source/Core/Core/Config/MainSettings.cpp b/Source/Core/Core/Config/MainSettings.cpp
index 1c97e21cdb..21e8efaec5 100644
--- a/Source/Core/Core/Config/MainSettings.cpp
+++ b/Source/Core/Core/Config/MainSettings.cpp
@@ -142,6 +142,7 @@ const Info<std::string> MAIN_FS_PATH{{System::Main, "General", "NANDRootPath"},
 const Info<std::string> MAIN_SD_PATH{{System::Main, "General", "WiiSDCardPath"}, ""};
 
 // Main.Network
+
 const Info<bool> MAIN_NETWORK_SSL_DUMP_READ{{System::Main, "Network", "SSLDumpRead"}, false};
 const Info<bool> MAIN_NETWORK_SSL_DUMP_WRITE{{System::Main, "Network", "SSLDumpWrite"}, false};
 const Info<bool> MAIN_NETWORK_SSL_VERIFY_CERTIFICATES{
@@ -149,4 +150,8 @@ const Info<bool> MAIN_NETWORK_SSL_VERIFY_CERTIFICATES{
 const Info<bool> MAIN_NETWORK_SSL_DUMP_ROOT_CA{{System::Main, "Network", "SSLDumpRootCA"}, false};
 const Info<bool> MAIN_NETWORK_SSL_DUMP_PEER_CERT{{System::Main, "Network", "SSLDumpPeerCert"},
                                                  false};
+
+// Main.Interface
+
+const Info<bool> MAIN_SKIP_NKIT_WARNING{{System::Main, "Interface", "SkipNKitWarning"}, false};
 }  // namespace Config
diff --git a/Source/Core/Core/Config/MainSettings.h b/Source/Core/Core/Config/MainSettings.h
index 61f59069ec..086e18419a 100644
--- a/Source/Core/Core/Config/MainSettings.h
+++ b/Source/Core/Core/Config/MainSettings.h
@@ -126,4 +126,8 @@ extern const Info<bool> MAIN_NETWORK_SSL_DUMP_WRITE;
 extern const Info<bool> MAIN_NETWORK_SSL_VERIFY_CERTIFICATES;
 extern const Info<bool> MAIN_NETWORK_SSL_DUMP_ROOT_CA;
 extern const Info<bool> MAIN_NETWORK_SSL_DUMP_PEER_CERT;
+
+// Main.Interface
+
+extern const Info<bool> MAIN_SKIP_NKIT_WARNING;
 }  // namespace Config
diff --git a/Source/Core/Core/ConfigLoaders/IsSettingSaveable.cpp b/Source/Core/Core/ConfigLoaders/IsSettingSaveable.cpp
index dff293772c..dcf608ac61 100644
--- a/Source/Core/Core/ConfigLoaders/IsSettingSaveable.cpp
+++ b/Source/Core/Core/ConfigLoaders/IsSettingSaveable.cpp
@@ -32,7 +32,7 @@ bool IsSettingSaveable(const Config::Location& config_location)
     }
   }
 
-  static constexpr std::array<const Config::Location*, 12> s_setting_saveable = {
+  static constexpr std::array<const Config::Location*, 13> s_setting_saveable = {
       // Main.Core
 
       &Config::MAIN_DEFAULT_ISO.location,
@@ -47,6 +47,10 @@ bool IsSettingSaveable(const Config::Location& config_location)
       &Config::MAIN_MEM2_SIZE.location,
       &Config::MAIN_GFX_BACKEND.location,
 
+      // Main.Interface
+
+      &Config::MAIN_SKIP_NKIT_WARNING.location,
+
       // UI.General
 
       &Config::MAIN_USE_DISCORD_PRESENCE.location,
diff --git a/Source/Core/DiscIO/Volume.h b/Source/Core/DiscIO/Volume.h
index a5c4e6be14..e176c5d72a 100644
--- a/Source/Core/DiscIO/Volume.h
+++ b/Source/Core/DiscIO/Volume.h
@@ -116,6 +116,7 @@ public:
   }
   virtual Platform GetVolumeType() const = 0;
   virtual bool IsDatelDisc() const = 0;
+  virtual bool IsNKit() const = 0;
   virtual bool SupportsIntegrityCheck() const { return false; }
   virtual bool CheckH3TableIntegrity(const Partition& partition) const { return false; }
   virtual bool CheckBlockIntegrity(u64 block_index, const std::vector<u8>& encrypted_data,
diff --git a/Source/Core/DiscIO/VolumeDisc.cpp b/Source/Core/DiscIO/VolumeDisc.cpp
index bf622bb8fb..fed82a8067 100644
--- a/Source/Core/DiscIO/VolumeDisc.cpp
+++ b/Source/Core/DiscIO/VolumeDisc.cpp
@@ -84,4 +84,10 @@ std::optional<u8> VolumeDisc::GetDiscNumber(const Partition& partition) const
   return ReadSwapped<u8>(6, partition);
 }
 
+bool VolumeDisc::IsNKit() const
+{
+  constexpr u32 NKIT_MAGIC = 0x4E4B4954;  // "NKIT"
+  return ReadSwapped<u32>(0x200, PARTITION_NONE) == NKIT_MAGIC;
+}
+
 }  // namespace DiscIO
diff --git a/Source/Core/DiscIO/VolumeDisc.h b/Source/Core/DiscIO/VolumeDisc.h
index 333ea7d4aa..680bbf83b0 100644
--- a/Source/Core/DiscIO/VolumeDisc.h
+++ b/Source/Core/DiscIO/VolumeDisc.h
@@ -22,6 +22,7 @@ public:
   std::string GetInternalName(const Partition& partition = PARTITION_NONE) const override;
   std::string GetApploaderDate(const Partition& partition) const override;
   std::optional<u8> GetDiscNumber(const Partition& partition = PARTITION_NONE) const override;
+  bool IsNKit() const override;
 
 protected:
   Region RegionCodeToRegion(std::optional<u32> region_code) const;
diff --git a/Source/Core/DiscIO/VolumeVerifier.cpp b/Source/Core/DiscIO/VolumeVerifier.cpp
index 00e850071a..c1a2bcbd90 100644
--- a/Source/Core/DiscIO/VolumeVerifier.cpp
+++ b/Source/Core/DiscIO/VolumeVerifier.cpp
@@ -988,22 +988,18 @@ void VolumeVerifier::CheckMisc()
     }
   }
 
-  if (IsDisc(m_volume.GetVolumeType()))
+  if (m_volume.IsNKit())
   {
-    constexpr u32 NKIT_MAGIC = 0x4E4B4954;  // "NKIT"
-    if (m_volume.ReadSwapped<u32>(0x200, PARTITION_NONE) == NKIT_MAGIC)
-    {
-      AddProblem(
-          Severity::Low,
-          Common::GetStringT("This disc image is in the NKit format. It is not a good dump in its "
-                             "current form, but it might become a good dump if converted back. "
-                             "The CRC32 of this file might match the CRC32 of a good dump even "
-                             "though the files are not identical."));
-    }
-
-    if (StringBeginsWith(game_id_unencrypted, "R8P"))
-      CheckSuperPaperMario();
+    AddProblem(
+        Severity::Low,
+        Common::GetStringT("This disc image is in the NKit format. It is not a good dump in its "
+                           "current form, but it might become a good dump if converted back. "
+                           "The CRC32 of this file might match the CRC32 of a good dump even "
+                           "though the files are not identical."));
   }
+
+  if (IsDisc(m_volume.GetVolumeType()) && StringBeginsWith(game_id_unencrypted, "R8P"))
+    CheckSuperPaperMario();
 }
 
 void VolumeVerifier::CheckSuperPaperMario()
diff --git a/Source/Core/DiscIO/VolumeWad.cpp b/Source/Core/DiscIO/VolumeWad.cpp
index 61b772ec31..b7b8fa35cd 100644
--- a/Source/Core/DiscIO/VolumeWad.cpp
+++ b/Source/Core/DiscIO/VolumeWad.cpp
@@ -289,6 +289,11 @@ bool VolumeWAD::IsDatelDisc() const
   return false;
 }
 
+bool VolumeWAD::IsNKit() const
+{
+  return false;
+}
+
 std::map<Language, std::string> VolumeWAD::GetLongNames() const
 {
   if (!m_tmd.IsValid() || !IOS::ES::IsChannel(m_tmd.GetTitleId()))
diff --git a/Source/Core/DiscIO/VolumeWad.h b/Source/Core/DiscIO/VolumeWad.h
index d76b8853ec..a4c311da78 100644
--- a/Source/Core/DiscIO/VolumeWad.h
+++ b/Source/Core/DiscIO/VolumeWad.h
@@ -60,6 +60,7 @@ public:
   }
   Platform GetVolumeType() const override;
   bool IsDatelDisc() const override;
+  bool IsNKit() const override;
   Region GetRegion() const override;
   Country GetCountry(const Partition& partition = PARTITION_NONE) const override;
 
diff --git a/Source/Core/DolphinQt/CMakeLists.txt b/Source/Core/DolphinQt/CMakeLists.txt
index 269083c4dc..8388f7bb6d 100644
--- a/Source/Core/DolphinQt/CMakeLists.txt
+++ b/Source/Core/DolphinQt/CMakeLists.txt
@@ -37,6 +37,8 @@ add_executable(dolphin-emu
   MainWindow.h
   MenuBar.cpp
   MenuBar.h
+  NKitWarningDialog.cpp
+  NKitWarningDialog.h
   RenderWidget.cpp
   RenderWidget.h
   Resources.cpp
diff --git a/Source/Core/DolphinQt/DolphinQt.vcxproj b/Source/Core/DolphinQt/DolphinQt.vcxproj
index 1e4fd3b0b2..6fe7dfb10b 100644
--- a/Source/Core/DolphinQt/DolphinQt.vcxproj
+++ b/Source/Core/DolphinQt/DolphinQt.vcxproj
@@ -178,6 +178,7 @@
     <QtMoc Include="NetPlay\NetPlayDialog.h" />
     <QtMoc Include="NetPlay\NetPlaySetupDialog.h" />
     <QtMoc Include="NetPlay\PadMappingDialog.h" />
+    <QtMoc Include="NKitWarningDialog.h" />
     <QtMoc Include="QtUtils\AspectRatioWidget.h" />
     <QtMoc Include="QtUtils\BlockUserInputFilter.h" />
     <QtMoc Include="QtUtils\DoubleClickEventFilter.h" />
@@ -290,6 +291,7 @@
     <ClCompile Include="$(QtMocOutPrefix)NetPlaySetupDialog.cpp" />
     <ClCompile Include="$(QtMocOutPrefix)NewBreakpointDialog.cpp" />
     <ClCompile Include="$(QtMocOutPrefix)NewPatchDialog.cpp" />
+    <ClCompile Include="$(QtMocOutPrefix)NKitWarningDialog.cpp" />
     <ClCompile Include="$(QtMocOutPrefix)PadMappingDialog.cpp" />
     <ClCompile Include="$(QtMocOutPrefix)ParallelProgressDialog.cpp" />
     <ClCompile Include="$(QtMocOutPrefix)UTF8CodePointCountValidator.cpp" />
@@ -394,6 +396,7 @@
     <ClCompile Include="DiscordJoinRequestDialog.cpp" />
     <ClCompile Include="FIFO\FIFOAnalyzer.cpp" />
     <ClCompile Include="FIFO\FIFOPlayerWindow.cpp" />
+    <ClCompile Include="NKitWarningDialog.cpp" />
     <ClCompile Include="QtUtils\WinIconHelper.cpp" />
     <ClCompile Include="ResourcePackManager.cpp" />
     <ClCompile Include="TAS\GCTASInputWindow.cpp" />
diff --git a/Source/Core/DolphinQt/MainWindow.cpp b/Source/Core/DolphinQt/MainWindow.cpp
index 1ecb875986..bff3a6422c 100644
--- a/Source/Core/DolphinQt/MainWindow.cpp
+++ b/Source/Core/DolphinQt/MainWindow.cpp
@@ -18,6 +18,7 @@
 
 #include <future>
 #include <optional>
+#include <variant>
 
 #if defined(__unix__) || defined(__unix) || defined(__APPLE__)
 #include <signal.h>
@@ -83,6 +84,7 @@
 #include "DolphinQt/HotkeyScheduler.h"
 #include "DolphinQt/MainWindow.h"
 #include "DolphinQt/MenuBar.h"
+#include "DolphinQt/NKitWarningDialog.h"
 #include "DolphinQt/NetPlay/NetPlayBrowser.h"
 #include "DolphinQt/NetPlay/NetPlayDialog.h"
 #include "DolphinQt/NetPlay/NetPlaySetupDialog.h"
@@ -952,6 +954,15 @@ void MainWindow::StartGame(const std::vector<std::string>& paths,
 
 void MainWindow::StartGame(std::unique_ptr<BootParameters>&& parameters)
 {
+  if (std::holds_alternative<BootParameters::Disc>(parameters->parameters))
+  {
+    if (std::get<BootParameters::Disc>(parameters->parameters).volume->IsNKit())
+    {
+      if (!NKitWarningDialog::ShowUnlessDisabled())
+        return;
+    }
+  }
+
   // If we're running, only start a new game once we've stopped the last.
   if (Core::GetState() != Core::State::Uninitialized)
   {
diff --git a/Source/Core/DolphinQt/NKitWarningDialog.cpp b/Source/Core/DolphinQt/NKitWarningDialog.cpp
new file mode 100644
index 0000000000..3b8a821b8a
--- /dev/null
+++ b/Source/Core/DolphinQt/NKitWarningDialog.cpp
@@ -0,0 +1,87 @@
+// Copyright 2020 Dolphin Emulator Project
+// Licensed under GPLv2+
+// Refer to the license.txt file included.
+
+#include "DolphinQt/NKitWarningDialog.h"
+
+#include <QApplication>
+#include <QCheckBox>
+#include <QHBoxLayout>
+#include <QIcon>
+#include <QLabel>
+#include <QPushButton>
+#include <QStyle>
+#include <QVBoxLayout>
+
+#include "Common/Config/Config.h"
+#include "Core/Config/MainSettings.h"
+#include "DolphinQt/Resources.h"
+
+bool NKitWarningDialog::ShowUnlessDisabled(QWidget* parent)
+{
+  if (Config::Get(Config::MAIN_SKIP_NKIT_WARNING))
+    return true;
+  else
+    return NKitWarningDialog(parent).exec() == QDialog::Accepted;
+}
+
+NKitWarningDialog::NKitWarningDialog(QWidget* parent) : QDialog(parent)
+{
+  setWindowTitle(tr("NKit Warning"));
+  setWindowFlags(windowFlags() & ~Qt::WindowContextHelpButtonHint);
+  setWindowIcon(Resources::GetAppIcon());
+
+  QVBoxLayout* main_layout = new QVBoxLayout;
+
+  QLabel* warning = new QLabel(
+      tr("You are about to run an NKit disc image. NKit disc images cause problems that don't "
+         "happen with normal disc images. These problems include:\n"
+         "\n"
+         "• The emulated loading times are longer\n"
+         "• You can't use NetPlay with people who have normal disc images\n"
+         "• Input recordings are not compatible between NKit disc images and normal disc images\n"
+         "• Savestates are not compatible between NKit disc images and normal disc images\n"
+         "• Some games crash, such as Super Paper Mario\n"
+         "• Wii games don't work at all in older versions of Dolphin and in many other programs\n"
+         "\n"
+         "Are you sure you want to continue anyway?\n"));
+  warning->setWordWrap(true);
+  main_layout->addWidget(warning);
+
+  QCheckBox* checkbox_accept = new QCheckBox(tr("I am aware of the risks and want to continue"));
+  main_layout->addWidget(checkbox_accept);
+
+  QCheckBox* checkbox_skip = new QCheckBox(tr("Don't show this again"));
+  main_layout->addWidget(checkbox_skip);
+
+  QHBoxLayout* button_layout = new QHBoxLayout;
+  QPushButton* ok = new QPushButton(tr("OK"));
+  button_layout->addWidget(ok);
+  QPushButton* cancel = new QPushButton(tr("Cancel"));
+  button_layout->addWidget(cancel);
+  main_layout->addLayout(button_layout);
+
+  QHBoxLayout* top_layout = new QHBoxLayout;
+
+  QIcon icon = QApplication::style()->standardIcon(QStyle::SP_MessageBoxWarning);
+  QLabel* icon_label = new QLabel;
+  icon_label->setPixmap(icon.pixmap(100));
+  icon_label->setAlignment(Qt::AlignTop);
+  top_layout->addWidget(icon_label);
+  top_layout->addSpacing(10);
+
+  top_layout->addLayout(main_layout);
+
+  setLayout(top_layout);
+
+  connect(ok, &QPushButton::clicked, this, &QDialog::accept);
+  connect(cancel, &QPushButton::clicked, this, &QDialog::reject);
+
+  ok->setEnabled(false);
+  connect(checkbox_accept, &QCheckBox::stateChanged,
+          [&ok](int state) { ok->setEnabled(state == Qt::Checked); });
+
+  connect(this, &QDialog::accepted, [checkbox_skip] {
+    Config::SetBase(Config::MAIN_SKIP_NKIT_WARNING, checkbox_skip->isChecked());
+  });
+}
diff --git a/Source/Core/DolphinQt/NKitWarningDialog.h b/Source/Core/DolphinQt/NKitWarningDialog.h
new file mode 100644
index 0000000000..df82ab5332
--- /dev/null
+++ b/Source/Core/DolphinQt/NKitWarningDialog.h
@@ -0,0 +1,19 @@
+// Copyright 2020 Dolphin Emulator Project
+// Licensed under GPLv2+
+// Refer to the license.txt file included.
+
+#pragma once
+
+#include <QDialog>
+#include <QWidget>
+
+class NKitWarningDialog final : public QDialog
+{
+  Q_OBJECT
+
+public:
+  static bool ShowUnlessDisabled(QWidget* parent = nullptr);
+
+private:
+  explicit NKitWarningDialog(QWidget* parent = nullptr);
+};