Set graphics settings while playing a movie in UpdateActiveConfig(), so settings can't be changed for a frame.

Source/Core/Core/Src/Movie.cpp

@@ -126,11 +126,6 @@ void FrameUpdate()
 		g_totalFrames = g_currentFrame;
 		g_totalLagCount = g_currentLagCount;
 	}
-	if (IsPlayingInput() && IsConfigSaved())
-	{
-		SetGraphicsConfig();
-	}
-
 	if (g_bFrameStep)
 	{
 		Core::SetState(Core::CORE_PAUSE);

Source/Core/VideoCommon/Src/VideoConfig.cpp

@@ -10,12 +10,15 @@
 #include "VideoCommon.h"
 #include "FileUtil.h"
 #include "Core.h"
+#include "Movie.h"
 
 VideoConfig g_Config;
 VideoConfig g_ActiveConfig;
 
 void UpdateActiveConfig()
 {
+	if (Movie::IsPlayingInput() && Movie::IsConfigSaved())
+		Movie::SetGraphicsConfig();
 	g_ActiveConfig = g_Config;
 }