diff --git a/desmume/src/Makefile.am b/desmume/src/Makefile.am
index 6071969ad..d75652990 100644
--- a/desmume/src/Makefile.am
+++ b/desmume/src/Makefile.am
@@ -1,6 +1,7 @@
 include $(top_srcdir)/src/desmume.mk
 
-EXTRA_DIST = build.bat instruction_tabdef.inc thumb_tabdef.inc fs-linux.cpp fs-windows.cpp
+EXTRA_DIST = build.bat instruction_tabdef.inc thumb_tabdef.inc fs-linux.cpp fs-windows.cpp \
+	matrix_sse2-x64.asm matrix_sse2-x86.asm
 if HAVE_GDB_STUB
 SUBDIRS = . gdbstub $(UI_DIR)
 else
diff --git a/desmume/src/gtk/Makefile.am b/desmume/src/gtk/Makefile.am
index 5dab238cf..bf1b73397 100644
--- a/desmume/src/gtk/Makefile.am
+++ b/desmume/src/gtk/Makefile.am
@@ -15,7 +15,6 @@ desmume_SOURCES = \
 	desmume.h desmume.cpp \
 	dTool.h dToolsList.cpp \
 	tools/ioregsView.cpp tools/ioregsView.h \
-	globals.h \
 	../sndsdl.cpp \
 	../ctrlssdl.h ../ctrlssdl.cpp \
 	gdk_3Demu.cpp gdk_3Demu.h \
diff --git a/desmume/src/windows/Makefile.am b/desmume/src/windows/Makefile.am
index 468a1af22..28c29b009 100644
--- a/desmume/src/windows/Makefile.am
+++ b/desmume/src/windows/Makefile.am
@@ -17,7 +17,13 @@ desmume_SOURCES = \
 	AboutBox.cpp AboutBox.h \
 	colorctrl.cpp colorctrl.h \
 	lightView.cpp lightView.h \
-	matrixView.cpp matrixView.h
+	matrixView.cpp matrixView.h \
+	aviout.cpp console.cpp console.h \
+	inputdx.cpp inputdx.h ogl.cpp \
+	throttle.cpp throttle.h windriver.h \
+	DeSmuME_2005.vcproj DeSmuME_2008.vcproj \
+	DeSmuME_Intel.icproj DeSmuME_Intel.vcproj \
+	DeSmuME_x64.manifest DeSmuME_x86.manifest
 desmume_LDADD = ../libdesmume.a yopyop_private.o
 if HAVE_GDB_STUB
 desmume_LDADD += ../gdbstub/libgdbstub.a