plumbing for that skip option. do not look at this commit, it will displease you.

mgba

@@ -1 +1 @@
-Subproject commit 4536ce6af06ca80d34fd4c70b54083889b2d74bf
+Subproject commit c70b9a56dc3e197f400061b9635d4d9c1996e282

src/BizHawk.Client.EmuHawk/MainForm.Events.cs

@@ -1531,7 +1531,7 @@ namespace BizHawk.Client.EmuHawk
 
 		private void BatchRunnerMenuItem_Click(object sender, EventArgs e)
 		{
-			using var form = new BatchRun();
+			using var form = new BatchRun(this);
 			form.ShowDialog();
 		}
 

src/BizHawk.Client.EmuHawk/MainForm.cs

@@ -83,14 +83,18 @@ namespace BizHawk.Client.EmuHawk
 			// its.. weird. don't ask.
 		}
 
-		private CoreComm CreateCoreComm()
+		public CoreComm CreateCoreComm()
 		{
 			var cfp = new CoreFileProvider(
 				ShowMessageCoreComm,
 				Global.FirmwareManager,
 				Config.PathEntries,
 				Config.FirmwareUserSpecifications);
-			return new CoreComm(ShowMessageCoreComm, NotifyCoreComm, cfp);
+			var prefs = CoreComm.CorePreferencesFlags.None;
+			if (Config.SkipWaterboxIntegrityChecks)
+				prefs = CoreComm.CorePreferencesFlags.WaterboxCoreConsistencyCheck | CoreComm.CorePreferencesFlags.WaterboxMemoryConsistencyCheck;
+
+			return new CoreComm(ShowMessageCoreComm, NotifyCoreComm, cfp, prefs);
 		}
 
 		public MainForm(string[] args)

src/BizHawk.Client.EmuHawk/OpenAdvancedChooser.cs

@@ -71,12 +71,7 @@ namespace BizHawk.Client.EmuHawk
 			// scan the current libretro core to see if it can be launched with NoGame,and other stuff
 			try
 			{
-				var cfp = new CoreFileProvider(
-					Console.WriteLine,
-					Global.FirmwareManager,
-					Global.Config.PathEntries,
-					Global.Config.FirmwareUserSpecifications);
-				var coreComm = new CoreComm(Console.WriteLine, Console.WriteLine, cfp);
+				var coreComm = _mainForm.CreateCoreComm();
 				using var retro = new LibretroCore(coreComm, Global.Game, core);
 				btnLibretroLaunchGame.Enabled = true;
 				if (retro.Description.SupportsNoGame)

src/BizHawk.Client.EmuHawk/tools/BatchRun.cs

@@ -10,9 +10,11 @@ namespace BizHawk.Client.EmuHawk
 	{
 		private Thread _thread;
 		private List<BatchRunner.Result> _mostRecentResults;
+		private MainForm _mainForm;
 
-		public BatchRun()
+		public BatchRun(MainForm mainForm)
 		{
+			this._mainForm = mainForm;
 			InitializeComponent();
 		}
 
@@ -81,7 +83,7 @@ namespace BizHawk.Client.EmuHawk
 			try
 			{
 				var pp = (Tuple<int, List<string>>)o;
-				BatchRunner br = new BatchRunner(pp.Item2, pp.Item1);
+				BatchRunner br = new BatchRunner(_mainForm, pp.Item2, pp.Item1);
 				br.OnProgress += br_OnProgress;
 				var results = br.Run();
 				this.Invoke(() => { label3.Text = "Status: Finished!"; _mostRecentResults = results; });

src/BizHawk.Client.EmuHawk/tools/BatchRunner.cs

@@ -65,7 +65,7 @@ namespace BizHawk.Client.EmuHawk
 			}
 		}
 
-		public BatchRunner(IEnumerable<string> files, int numFrames)
+		public BatchRunner(MainForm mainForm, IEnumerable<string> files, int numFrames)
 		{
 			_files = new List<string>(files);
 			_numFrames = numFrames;
@@ -74,7 +74,7 @@ namespace BizHawk.Client.EmuHawk
 			_ldr.OnLoadError += OnLoadError;
 			_ldr.ChooseArchive = ChooseArchive;
 			var cfp = new CoreFileProvider(CommMessage, Global.FirmwareManager, Global.Config.PathEntries, Global.Config.FirmwareUserSpecifications);
-			_comm = new CoreComm(CommMessage, CommMessage, cfp);
+			_comm = mainForm.CreateCoreComm();
 		}
 
 		private void OnLoadError(object sender, RomLoader.RomErrorArgs e)

src/BizHawk.Emulation.Common/CoreComms.cs

@@ -13,11 +13,14 @@ namespace BizHawk.Emulation.Common
 		public CoreComm(
 			Action<string> showMessage,
 			Action<string> notifyMessage,
-			ICoreFileProvider coreFileProvider)
+			ICoreFileProvider coreFileProvider,
+			CorePreferencesFlags prefs
+			)
 		{
 			ShowMessage = showMessage;
 			Notify = notifyMessage;
 			CoreFileProvider = coreFileProvider;
+			CorePreferences = prefs;
 		}
 
 		public ICoreFileProvider CoreFileProvider { get; }
@@ -31,5 +34,18 @@ namespace BizHawk.Emulation.Common
 		/// Gets a message to show. less annoying (OSD message). Should be used for ignorable helpful messages
 		/// </summary>
 		public Action<string> Notify { get; }
+
+		[Flags]
+		public enum CorePreferencesFlags
+		{
+			None = 0,
+			WaterboxCoreConsistencyCheck = 1,
+			WaterboxMemoryConsistencyCheck = 2
+		}
+
+		/// <summary>
+		/// Yeah, I put more stuff in corecomm. If you don't like it, change the settings/syncsettings stuff to support multiple "settings sets" to act like ini file sections kind of, so that we can hand a generic settings object to cores instead of strictly ones defined by the cores
+		/// </summary>
+		public CorePreferencesFlags CorePreferences { get; }
 	}
 }